Rroxscaffold_5G00360510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000690
Physical Location & Seq
Forward (+)
41012526 .. 41018085
5560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360510.1

Sequence Viewer

Length: 402 bp
ATGAACAGAACGCCTTCACTCCAACTCCGGTATGTGGTCGGAGTCGAAATTACCATCGGGGTAGATCGATGCTTTGCCGAGTCGGCGGTTCACGGTTGCTTTTGGTTGTCCTCTAGTGCATGTATTCGGTTTATTGCCTCTTTGAACGAGATACAAAGGCCTGCAGACATAAAATTAATTGTGTGCAGCAAGTGGCTGCTCTTAGAGCATCTTAAAACTTGGGCAACAAGCTCAAAGAAGGAGCTGGTTGTGACAAAACCCTTCCACCGGCACCATCTCGCTTGGCTCGATGACTTCGACCTCATCACACGCGGCTTTGACAACGCTTTCTCTATGGTCGATAAGCTTATCCTAGCTCTCCATGGTCGTTGGTTTCCTCTCCGTTGCTCACTTCGAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.28

Weight (kDa)

9.17

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 270
AccII CGCG 1 cut(s) 312
AciI CCGC 2 cut(s) 86, 312
AfiI CCNNNNNNNGG 2 cut(s) 34, 267
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 4 cut(s) 231, 244, 346, 356
AluI AGCT 4 cut(s) 231, 244, 346, 356
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 186, 196
AseI ATTAAT 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 183, 198
BccI CCATC 2 cut(s) 62, 282
BfaI CTAG 3 cut(s) 114, 353, 400
BfmI CTRYAG 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 3 cut(s) 187, 197, 313
BlsI GCNGC 3 cut(s) 188, 198, 314
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 2 cut(s) 59, 217
Bsa29I ATCGAT 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 267
Bse118I RCCGGY 1 cut(s) 267
BseCI ATCGAT 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 34, 267
BseXI GCAGC 2 cut(s) 183, 198
BsgI GTGCAG 1 cut(s) 205
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 270
BshVI ATCGAT 1 cut(s) 67
BsiSI CCGG 2 cut(s) 28, 268
BslI CCNNNNNNNGG 2 cut(s) 34, 267
BsnI GGCC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 64
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 2 cut(s) 86, 312
BspANI GGCC 1 cut(s) 160
BspDI ATCGAT 1 cut(s) 67
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 272
BspMAI CTGCAG 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 312
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 83, 205
BstNSI RCATGY 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 183, 198
Bsu15I ATCGAT 1 cut(s) 67
BsuRI GGCC 1 cut(s) 160
BsuTUI ATCGAT 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 267
ClaI ATCGAT 1 cut(s) 67
CviAII CATG 2 cut(s) 120, 362
CviJI RGCY 9 cut(s) 160, 196, 231, 244, 286, 315, 346, 356, 399
CviKI_1 RGCY 9 cut(s) 160, 196, 231, 244, 286, 315, 346, 356, 399
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 2 cut(s) 123, 365
FaiI YATR 5 cut(s) 33, 121, 170, 335, 363
FatI CATG 2 cut(s) 119, 361
Fnu4HI GCNGC 3 cut(s) 187, 197, 313
Fsp4HI GCNGC 3 cut(s) 187, 197, 313
FspBI CTAG 3 cut(s) 114, 353, 400
GluI GCNGC 3 cut(s) 187, 197, 313
HaeIII GGCC 1 cut(s) 160
HapII CCGG 2 cut(s) 28, 268
Hin1II CATG 2 cut(s) 123, 365
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 2 cut(s) 42, 80
HpaII CCGG 2 cut(s) 28, 268
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 3 cut(s) 24, 232, 271
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 119, 164, 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 205
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 2 cut(s) 123, 365
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 4 cut(s) 41, 174, 230, 281
Lsp1109I GCAGC 2 cut(s) 183, 198
LweI GCATC 2 cut(s) 59, 217
MaeI CTAG 3 cut(s) 114, 353, 400
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MluCI AATT 3 cut(s) 48, 173, 177
MlyI GAGTC 2 cut(s) 51, 89
MmeI TCCRAC 2 cut(s) 19, 46
MnlI CCTC 5 cut(s) 121, 148, 311, 387, 389
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 2 cut(s) 176, 213
MspI CCGG 2 cut(s) 28, 268
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 83, 205
NcoI CCATGG 1 cut(s) 361
NdeII GATC 1 cut(s) 64
NlaIII CATG 2 cut(s) 123, 365
NlaIV GGNNCC 1 cut(s) 272
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 1 cut(s) 123
PceI AGGCCT 1 cut(s) 160
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 294
PdmI GAANNNNTTC 1 cut(s) 13
PkrI GCNGC 3 cut(s) 188, 198, 314
PleI GAGTC 2 cut(s) 50, 88
PpsI GAGTC 2 cut(s) 50, 88
PshBI ATTAAT 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 166
SaqAI TTAA 2 cut(s) 176, 213
SatI GCNGC 3 cut(s) 187, 197, 313
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 2 cut(s) 51, 89
SetI ASST 5 cut(s) 233, 246, 303, 348, 358
SfaNI GCATC 2 cut(s) 59, 217
SfcI CTRYAG 1 cut(s) 162
Sse9I AATT 3 cut(s) 48, 173, 177
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 2 cut(s) 86, 312
SspMI CTAG 3 cut(s) 114, 353, 400
StuI AGGCCT 1 cut(s) 160
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 6 cut(s) 45, 67, 288, 297, 339, 394
TasI AATT 3 cut(s) 48, 173, 177
TauI GCSGC 1 cut(s) 315
Tru1I TTAA 2 cut(s) 176, 213
Tru9I TTAA 2 cut(s) 176, 213
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 186, 196
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 371
VspI ATTAAT 1 cut(s) 176
XceI RCATGY 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 3 cut(s) 114, 353, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.