Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003623.1

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Forward (+)

62822 .. 63765

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003623.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggacaattttctaaatgatatggaaagagagaagcccatcaggtttacttctctacaactgcggattgcaactgataacttcaccaacttgttgggttcaggagggttcggttcagtttataaaggtgtatctagtaatggaacacttgtggcagtgaaggttctaagtggtacctcggacaagagaattgatgagcaatttatggcggaagttagtacacttggcaggattcatcatgtcaacttggttcgtctccatggtttctgctttgagagacacctcagagcgcttgtttatgagtatgtgtcaaatggttcgcttgacaagtttcttttccatggaaacaagattttaagattcgaaaagcttcatgaaattgcagttgggacagctagagggattgcttacttgcacgaagaatgccagcagcgaatagtccactacgatataaaacctggaaatattcttttagatgtgaatttcttccctaaagttgctgatttcggtttggccaagctgtgcaacagggacaatactcatatatcaatgacaggtgggaggggaactcctggttatgctgcaccaaaactttggctggggcttcctataacccacaaatgtgatgtgtacatttacatctttggattaatgctgttattcgagattataggtagaagaagaaaacttgaccttaatcttccagagagccaagactggtttccaaggtgggcatggaagaagttcgaagctggtgaactaggacaaccgggtagtatgtggtccgagttgaggcctttaatgagtgttgcggtgaagatgttggaaggagaaattgatattcctagaccttcaattaatccattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

289

Amino Acids

32.86

Weight (kDa)

8.81

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	123
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	3 cut(s)	64, 209, 812
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	481
AfaI	GTAC	3 cut(s)	175, 220, 632
AfeI	AGCGCT	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	792
AgsI	TTSAA	1 cut(s)	855
AjnI	CCWGG	2 cut(s)	457, 571
AjuI	GAANNNNNNNTTGG	4 cut(s)	369, 401, 705, 737
AleI	CACNNNNGTG	1 cut(s)	621
AluBI	AGCT	4 cut(s)	370, 395, 520, 752
AluI	AGCT	4 cut(s)	370, 395, 520, 752
Alw26I	GTCTC	2 cut(s)	260, 271
Aor51HI	AGCGCT	1 cut(s)	291
AoxI	GGCC	2 cut(s)	513, 794
ApeKI	GCWGC	2 cut(s)	430, 581
ApoI	RAATTY	1 cut(s)	481
AseI	ATTAAT	2 cut(s)	650, 858
Asp700I	GAANNNNTTC	3 cut(s)	369, 485, 743
Asp718I	GGTACC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	783
AsuC2I	CCSGG	1 cut(s)	771
AsuHPI	GGTGA	3 cut(s)	76, 767, 826
AsuII	TTCGAA	2 cut(s)	363, 747
AvaII	GGWCC	1 cut(s)	783
BalI	TGGCCA	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	442, 568
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	459, 573
BcnI	CCSGG	1 cut(s)	771
BcoDI	GTCTC	2 cut(s)	260, 271
BfaI	CTAG	5 cut(s)	135, 396, 761, 846, 868
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	2 cut(s)	431, 582
BlsI	GCNGC	2 cut(s)	432, 583
Bme1390I	CCNGG	3 cut(s)	459, 573, 771
Bme18I	GGWCC	1 cut(s)	783
BmgT120I	GGNCC	1 cut(s)	783
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	3 cut(s)	459, 573, 771
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
Bpu14I	TTCGAA	2 cut(s)	363, 747
BpuMI	CCSGG	1 cut(s)	771
BsaJI	CCNNGG	4 cut(s)	177, 259, 340, 725
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse1I	ACTGG	1 cut(s)	722
BseBI	CCWGG	2 cut(s)	459, 573
BseDI	CCNNGG	4 cut(s)	177, 259, 340, 725
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	722
BseXI	GCAGC	2 cut(s)	442, 568
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	515, 796
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	770
BslFI	GGGAC	2 cut(s)	403, 545
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmAI	GTCTC	2 cut(s)	260, 271
BsmBI	CGTCTC	1 cut(s)	260
BsmFI	GGGAC	2 cut(s)	403, 545
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	515, 796
Bsp119I	TTCGAA	2 cut(s)	363, 747
Bsp1407I	TGTACA	1 cut(s)	630
Bsp19I	CCATGG	2 cut(s)	259, 340
BspACI	CCGC	3 cut(s)	64, 209, 812
BspANI	GGCC	2 cut(s)	515, 796
BspCNI	CTCAG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	175
BspT104I	TTCGAA	2 cut(s)	363, 747
BspT107I	GGYRCC	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	722
BssECI	CCNNGG	4 cut(s)	177, 259, 340, 725
BssT1I	CCWWGG	3 cut(s)	259, 340, 725
Bst2UI	CCWGG	2 cut(s)	459, 573
BstAUI	TGTACA	1 cut(s)	630
BstBI	TTCGAA	2 cut(s)	363, 747
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	2 cut(s)	167, 284
BstDSI	CCRYGG	2 cut(s)	259, 340
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstMAI	GTCTC	2 cut(s)	260, 271
BstNI	CCWGG	2 cut(s)	459, 573
BstSCI	CCNGG	3 cut(s)	457, 571, 769
BstV1I	GCAGC	2 cut(s)	442, 568
BstXI	CCANNNNNNTGG	2 cut(s)	94, 594
BsuRI	GGCC	2 cut(s)	515, 796
BtgI	CCRYGG	2 cut(s)	259, 340
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	428
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	783
Csp6I	GTAC	3 cut(s)	174, 219, 631
CviAII	CATG	5 cut(s)	239, 260, 341, 374, 735
CviQI	GTAC	3 cut(s)	174, 219, 631
DdeI	CTNAG	2 cut(s)	167, 284
EaeI	YGGCCR	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	3 cut(s)	259, 340, 725
Eco147I	AGGCCT	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	783
Eco47III	AGCGCT	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	457, 571
EcoT14I	CCWWGG	3 cut(s)	259, 340, 725
ErhI	CCWWGG	3 cut(s)	259, 340, 725
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	5 cut(s)	242, 263, 344, 377, 738
FaqI	GGGAC	2 cut(s)	403, 545
FatI	CATG	5 cut(s)	238, 259, 340, 373, 734
Fnu4HI	GCNGC	2 cut(s)	431, 582
Fsp4HI	GCNGC	2 cut(s)	431, 582
FspBI	CTAG	5 cut(s)	135, 396, 761, 846, 868
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	2 cut(s)	431, 582
GsaI	CCCAGC	1 cut(s)	602
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	515, 796
HapII	CCGG	1 cut(s)	770
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	5 cut(s)	242, 263, 344, 377, 738
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	232, 360
HpaII	CCGG	1 cut(s)	770
HphI	GGTGA	3 cut(s)	76, 767, 826
Hpy166II	GTNNAC	6 cut(s)	48, 221, 244, 442, 631, 758
Hpy188I	TCNGA	3 cut(s)	181, 287, 787
Hpy188III	TCNNGA	4 cut(s)	102, 374, 664, 704
Hpy8I	GTNNAC	6 cut(s)	48, 221, 244, 442, 631, 758
HpyAV	CCTTC	3 cut(s)	154, 821, 861
HpyCH4V	TGCA	5 cut(s)	71, 383, 415, 525, 584
HpyF3I	CTNAG	2 cut(s)	167, 284
Hsp92II	CATG	5 cut(s)	242, 263, 344, 377, 738
HspAI	GCGC	1 cut(s)	290
KpnI	GGTACC	1 cut(s)	177
Lsp1109I	GCAGC	2 cut(s)	442, 568
MaeI	CTAG	5 cut(s)	135, 396, 761, 846, 868
MboII	GAAGA	7 cut(s)	431, 478, 690, 692, 693, 751, 829
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	7 cut(s)	7, 189, 200, 378, 481, 834, 855
MluNI	TGGCCA	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	804
MnlI	CCTC	6 cut(s)	98, 187, 293, 392, 555, 786
Mox20I	TGGCCA	1 cut(s)	515
MroXI	GAANNNNTTC	3 cut(s)	369, 485, 743
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	5 cut(s)	356, 650, 696, 800, 858
MslI	CAYNNNNRTG	1 cut(s)	621
Msp20I	TGGCCA	1 cut(s)	515
MspI	CCGG	1 cut(s)	770
MspR9I	CCNGG	3 cut(s)	459, 573, 771
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	2 cut(s)	459, 573
NciI	CCSGG	1 cut(s)	771
NcoI	CCATGG	2 cut(s)	259, 340
NlaIII	CATG	5 cut(s)	242, 263, 344, 377, 738
NlaIV	GGNNCC	1 cut(s)	175
NspV	TTCGAA	2 cut(s)	363, 747
OliI	CACNNNNGTG	1 cut(s)	621
PagI	TCATGA	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	796
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	3 cut(s)	369, 485, 743
PfeI	GAWTC	2 cut(s)	232, 360
PkrI	GCNGC	2 cut(s)	432, 583
PshBI	ATTAAT	2 cut(s)	650, 858
PsiI	TTATAA	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	457, 571
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	2 cut(s)	457, 571
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	783
RsaI	GTAC	3 cut(s)	175, 220, 632
RsaNI	GTAC	3 cut(s)	174, 219, 631
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	5 cut(s)	356, 650, 696, 800, 858
SatI	GCNGC	2 cut(s)	431, 582
Sau96I	GGNCC	1 cut(s)	783
ScrFI	CCNGG	3 cut(s)	459, 573, 771
SfuI	TTCGAA	2 cut(s)	363, 747
SinI	GGWCC	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	621
Sse9I	AATT	7 cut(s)	7, 189, 200, 378, 481, 834, 855
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	3 cut(s)	64, 209, 812
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	5 cut(s)	135, 396, 761, 846, 868
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	3 cut(s)	457, 571, 769
StyI	CCWWGG	3 cut(s)	259, 340, 725
TaqI	TCGA	3 cut(s)	363, 663, 747
TasI	AATT	7 cut(s)	7, 189, 200, 378, 481, 834, 855
TatI	WGTACW	2 cut(s)	218, 630
TfiI	GAWTC	2 cut(s)	232, 360
Tru1I	TTAA	5 cut(s)	356, 650, 696, 800, 858
Tru9I	TTAA	5 cut(s)	356, 650, 696, 800, 858
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	2 cut(s)	430, 581
TspDTI	ATGAA	3 cut(s)	224, 362, 390
TspRI	CASTG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	783
VspI	ATTAAT	2 cut(s)	650, 858
XapI	RAATTY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	732
XmnI	GAANNNNTTC	3 cut(s)	369, 485, 743
XspI	CTAG	5 cut(s)	135, 396, 761, 846, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.