RchiOBHm_Chr4g0401331
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
19454966 .. 19456073
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37326

Sequence Viewer

Length: 987 bp
ATGTCGAGAAATTATAGTGCCGTTGTGGTTGCGGTTGCCGTAGTTGTTGCCCTTGCCGTTTTCGTTGCCGTTGCCACTGTCGCTTTCGTTGTGAGTTACTTTGGAGGTGCAGTAGTTGCCATTGTTCTTGTAGCATTAGTCTGTCTGATGATTGCTATCACAGTTGAAGTATGGAGGAATCGACGTGATCAGAAAGGTAGCAGCTCTTATGATCCGACACTCACAATGGACAATTTTCTAAATGATATGGAAAGAGAGAAGCCCATCAGGTTTACTTCTCTACAACTTCGGATTGCAACTGATAACTTTATCAACTTGTTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGTGTATATAGTAATGGAACGCTTGTGGCAGTGAAGGTTCTAGGTGGTACCTCGAACAAGACAATTGATGAGCAATTCATGGCGGAAGTTAGTACACTTGGCAGGATTCATCATGTCAATTTGGTTCGTCTCCATGGTTTCTGCTTTGAGAGACCCCACAGAGCGCTTGTTTATGAGTATATGTCAAATGGTTCTCTTGACAAGTTTCTTTTCCATGGAAACAAGATCTTAGGATTCGAAAAGCTTCATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGATATAAAACCTGGAAATATTCTTTTGGATGTGAATTTCTTCCCTAAAGTTGCTGATTTCAGTTTGGCCAAGCTGTGCAACAGGGAGAATACTCATATATCAATGACAGGTGGGAGGGGAACTCCTGGTTATGCTGCACCAGAACTTTGGCTGGGGCTTCCTATAACCCACAAATGTGATGTGTACAGCTTTGGAATGCTGTTATTCGAGATTATAGGTAGAAGAAGGAACCTTGACCTTAATCTTACAGAAAGCCAATACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGAGAACTAA

Protein Analysis

328

Amino Acids

36.69

Weight (kDa)

8.51

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 104 - 296 3.8e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 105 - 300 2e-41 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 398
AciI CCGC 2 cut(s) 32, 434
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 1 cut(s) 706
AfaI GTAC 3 cut(s) 400, 445, 857
AfeI AGCGCT 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 947
AgsI TTSAA 2 cut(s) 167, 965
AjiI CACGTC 1 cut(s) 185
AjnI CCWGG 2 cut(s) 682, 796
AjuI GAANNNNNNNTTGG 4 cut(s) 594, 626, 921, 953
AleI CACNNNNGTG 1 cut(s) 846
AluBI AGCT 6 cut(s) 204, 595, 620, 745, 861, 968
AluI AGCT 6 cut(s) 204, 595, 620, 745, 861, 968
Alw26I GTCTC 2 cut(s) 485, 496
AlwI GGATC 1 cut(s) 206
Aor51HI AGCGCT 1 cut(s) 516
AoxI GGCC 1 cut(s) 738
ApeKI GCWGC 3 cut(s) 201, 655, 806
ApoI RAATTY 1 cut(s) 706
Asp700I GAANNNNTTC 2 cut(s) 594, 710
Asp718I GGTACC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 517
AsuHPI GGTGA 1 cut(s) 983
AsuII TTCGAA 1 cut(s) 588
BalI TGGCCA 1 cut(s) 740
BanI GGYRCC 1 cut(s) 398
BbvI GCAGC 3 cut(s) 213, 667, 793
BccI CCATC 2 cut(s) 272, 945
BceAI ACGGC 4 cut(s) 5, 23, 41, 53
BciT130I CCWGG 2 cut(s) 684, 798
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 485, 496
BfaI CTAG 3 cut(s) 392, 621, 977
BfoI RGCGCY 1 cut(s) 518
BglII AGATCT 1 cut(s) 576
BisI GCNGC 3 cut(s) 202, 656, 807
BlsI GCNGC 3 cut(s) 203, 657, 808
Bme1390I CCNGG 2 cut(s) 684, 798
BmgBI CACGTC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 400, 902
BmrFI CCNGG 2 cut(s) 684, 798
BplI GAGNNNNNCTC 2 cut(s) 778, 810
Bpu14I TTCGAA 1 cut(s) 588
BsaBI GATNNNNATC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 496
BsaJI CCNNGG 3 cut(s) 484, 565, 941
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 947
Bse1I ACTGG 1 cut(s) 938
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 2 cut(s) 684, 798
BseDI CCNNGG 3 cut(s) 484, 565, 941
BseGI GGATG 2 cut(s) 706, 956
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 947
BseNI ACTGG 1 cut(s) 938
BseXI GCAGC 3 cut(s) 213, 667, 793
BseYI CCCAGC 1 cut(s) 823
BsgI GTGCAG 2 cut(s) 129, 792
BshFI GGCC 1 cut(s) 740
BshNI GGYRCC 1 cut(s) 398
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 1 cut(s) 947
BsmAI GTCTC 2 cut(s) 485, 496
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 628
BsmI GAATGC 2 cut(s) 653, 873
BsnI GGCC 1 cut(s) 740
Bso31I GGTCTC 1 cut(s) 496
Bsp119I TTCGAA 1 cut(s) 588
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 3 cut(s) 187, 211, 576
Bsp19I CCATGG 2 cut(s) 484, 565
BspACI CCGC 2 cut(s) 32, 434
BspANI GGCC 1 cut(s) 740
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 400, 902
BspPI GGATC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 588
BspT107I GGYRCC 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 496
BsrGI TGTACA 1 cut(s) 855
BsrI ACTGG 1 cut(s) 938
BssECI CCNNGG 3 cut(s) 484, 565, 941
BssMI GATC 3 cut(s) 187, 211, 576
BssT1I CCWWGG 3 cut(s) 484, 565, 941
Bst2UI CCWGG 2 cut(s) 684, 798
Bst4CI ACNGT 2 cut(s) 79, 163
BstAPI GCANNNNNTGC 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 855
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 653
BstDEI CTNAG 1 cut(s) 580
BstDSI CCRYGG 2 cut(s) 484, 565
BstF5I GGATG 2 cut(s) 706, 956
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 3 cut(s) 190, 214, 579
BstMAI GTCTC 2 cut(s) 485, 496
BstMBI GATC 3 cut(s) 187, 211, 576
BstMWI GCNNNNNNNGC 2 cut(s) 80, 116
BstNI CCWGG 2 cut(s) 684, 798
BstSCI CCNGG 2 cut(s) 682, 796
BstV1I GCAGC 3 cut(s) 213, 667, 793
BstX2I RGATCY 1 cut(s) 576
BstXI CCANNNNNNTGG 1 cut(s) 819
BstYI RGATCY 1 cut(s) 576
BsuRI GGCC 1 cut(s) 740
BtgI CCRYGG 2 cut(s) 484, 565
BtrI CACGTC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 706, 956
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 75, 387
Cac8I GCNNGC 1 cut(s) 653
CciI TCATGA 1 cut(s) 598
CfoI GCGC 1 cut(s) 517
Csp6I GTAC 3 cut(s) 399, 444, 856
CviAII CATG 5 cut(s) 430, 464, 485, 566, 599
CviQI GTAC 3 cut(s) 399, 444, 856
DdeI CTNAG 1 cut(s) 580
DpnI GATC 3 cut(s) 189, 213, 578
DpnII GATC 3 cut(s) 187, 211, 576
EaeI YGGCCR 1 cut(s) 738
EciI GGCGGA 1 cut(s) 449
Eco130I CCWWGG 3 cut(s) 484, 565, 941
Eco31I GGTCTC 1 cut(s) 496
Eco47III AGCGCT 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 682, 796
EcoT14I CCWWGG 3 cut(s) 484, 565, 941
ErhI CCWWGG 3 cut(s) 484, 565, 941
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 5 cut(s) 433, 467, 488, 569, 602
FaqI GGGAC 1 cut(s) 628
FatI CATG 5 cut(s) 429, 463, 484, 565, 598
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 202, 656, 807
FokI GGATG 2 cut(s) 713, 963
Fsp4HI GCNGC 3 cut(s) 202, 656, 807
FspBI CTAG 3 cut(s) 392, 621, 977
GlaI GCGC 1 cut(s) 516
GluI GCNGC 3 cut(s) 202, 656, 807
GsaI CCCAGC 1 cut(s) 827
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 1 cut(s) 740
HhaI GCGC 1 cut(s) 517
Hin1II CATG 5 cut(s) 433, 467, 488, 569, 602
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 3 cut(s) 178, 457, 585
HphI GGTGA 1 cut(s) 983
Hpy166II GTNNAC 5 cut(s) 273, 446, 667, 856, 974
Hpy188I TCNGA 4 cut(s) 147, 192, 216, 291
Hpy188III TCNNGA 5 cut(s) 6, 327, 548, 599, 880
Hpy8I GTNNAC 5 cut(s) 273, 446, 667, 856, 974
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 2 cut(s) 379, 891
HpyCH4III ACNGT 2 cut(s) 79, 163
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 6 cut(s) 110, 296, 608, 640, 750, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 116
HpyF3I CTNAG 1 cut(s) 580
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 5 cut(s) 433, 467, 488, 569, 602
HspAI GCGC 1 cut(s) 515
KpnI GGTACC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 3 cut(s) 187, 211, 576
Lsp1109I GCAGC 3 cut(s) 213, 667, 793
MaeI CTAG 3 cut(s) 392, 621, 977
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 95
MalI GATC 3 cut(s) 189, 213, 578
MboI GATC 3 cut(s) 187, 211, 576
MboII GAAGA 4 cut(s) 656, 703, 906, 967
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 576
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 7 cut(s) 10, 232, 414, 425, 469, 603, 706
MluNI TGGCCA 1 cut(s) 740
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 6 cut(s) 98, 168, 323, 412, 617, 780
Mox20I TGGCCA 1 cut(s) 740
MroXI GAANNNNTTC 2 cut(s) 594, 710
MscI TGGCCA 1 cut(s) 740
MseI TTAA 1 cut(s) 912
MslI CAYNNNNRTG 1 cut(s) 846
Msp20I TGGCCA 1 cut(s) 740
MspR9I CCNGG 2 cut(s) 684, 798
MunI CAATTG 1 cut(s) 414
Mva1269I GAATGC 2 cut(s) 653, 873
MvaI CCWGG 2 cut(s) 684, 798
MwoI GCNNNNNNNGC 2 cut(s) 80, 116
NcoI CCATGG 2 cut(s) 484, 565
NdeII GATC 3 cut(s) 187, 211, 576
NlaIII CATG 5 cut(s) 433, 467, 488, 569, 602
NlaIV GGNNCC 2 cut(s) 400, 902
NspV TTCGAA 1 cut(s) 588
OliI CACNNNNGTG 1 cut(s) 846
PagI TCATGA 1 cut(s) 598
PctI GAATGC 2 cut(s) 653, 873
PdmI GAANNNNTTC 2 cut(s) 594, 710
PfeI GAWTC 3 cut(s) 178, 457, 585
PkrI GCNGC 3 cut(s) 203, 657, 808
PsiI TTATAA 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 682, 796
PspFI CCCAGC 1 cut(s) 823
PspGI CCWGG 2 cut(s) 682, 796
PspN4I GGNNCC 2 cut(s) 400, 902
PsuI RGATCY 1 cut(s) 576
RsaI GTAC 3 cut(s) 400, 445, 857
RsaNI GTAC 3 cut(s) 399, 444, 856
RseI CAYNNNNRTG 1 cut(s) 846
SaqAI TTAA 1 cut(s) 912
SatI GCNGC 3 cut(s) 202, 656, 807
Sau3AI GATC 3 cut(s) 187, 211, 576
ScrFI CCNGG 2 cut(s) 684, 798
SfuI TTCGAA 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 846
Sse9I AATT 7 cut(s) 10, 232, 414, 425, 469, 603, 706
SsiI CCGC 2 cut(s) 32, 434
SspI AATATT 1 cut(s) 691
SspMI CTAG 3 cut(s) 392, 621, 977
StyD4I CCNGG 2 cut(s) 682, 796
StyI CCWWGG 3 cut(s) 484, 565, 941
TaaI ACNGT 2 cut(s) 79, 163
TaiI ACGT 1 cut(s) 187
TaqI TCGA 5 cut(s) 5, 181, 404, 588, 879
TasI AATT 7 cut(s) 10, 232, 414, 425, 469, 603, 706
TatI WGTACW 2 cut(s) 443, 855
TfiI GAWTC 3 cut(s) 178, 457, 585
Tru1I TTAA 1 cut(s) 912
Tru9I TTAA 1 cut(s) 912
TscAI CASTG 2 cut(s) 82, 387
TseI GCWGC 3 cut(s) 201, 655, 806
TspDTI ATGAA 4 cut(s) 418, 449, 587, 615
TspRI CASTG 2 cut(s) 82, 387
XapI RAATTY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 948
XmnI GAANNNNTTC 2 cut(s) 594, 710
XspI CTAG 3 cut(s) 392, 621, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.