MD13G1250100.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
26527664 .. 26530418
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1250100.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGAACAAGTTTCTAAACGATATGGAAAGAGAGAAGCCCATCAGGTTCACTTCTCAACAACTTCGCATTGCGACTGATAACTTCACCAACCTGTTGGGCCAAGGAGGTTTTGGTGCAGTTTATAAAGGGATATTTAGCAACGGAACCCTTGTGGCCGTTAAGGTTCTAAATGGGAGCTCAGACAAAAGAATCGAGGAACAATTCATGGCGGAAGTTAGTACAATCGGAAGAATCCATCACTTCAATCTGGTCCGTCTTTATGGATTCTGCTTTGAGAAACACCTCAGAGCACTTGTTTATGAGTACATGGGAAATGGATCGCTTGACAAGTACTTATTTCGTAGCAACGCGGTGCTCTTAGGATTTGAGAAGTTACATGAAATTGCTGTTGGGACGGCGAGAGGGATCGCTTACTTGCACGAAGAATGTCAACAACGAATAATCCATTACGATATAAAACCTGAAAATATTCTTTTGGATGCAAACTTCTTTCCAAAAGTAGCTGATTTCGGTTTGGCCAAGTTGTGTAACAGGGACAATACTCACATAACCATGACAGGGGGGAGAGGGACTCCGGGTTATGCTGCACCGGAAGTTTGGCTGAGGTTTCCTATAACACACAAATGTGACGTGTACAGCTTTGGAATGCTATTGTTTGAGATCATAGGAAGGAGAAGGAATCTGGACAACAATATTCAAGATAGCCAAGATTGGTTCCCGAGGTGGGTATGGAAGAAGTTTGAACCGGGGGAATTAGGAGAGCTGATGGTAGTTTGTGGAATAGAGGAGAAAGATAAAGAGAGGGCAGAGAGAATGGTAAAGGTAGCTCTGTGGTGTGTACAGCATATGCCCGAGGCAAGGCCTTTGATGAGTGCCGTGGTTAAAATGTTGGAAGGTGCAGTTGAGATTCCTACACCTTCAACTAACCCTTTCCAGCACTTGATGCCGGTCGCTCCATACCCTACTGCACCTGTCTATGATACTTCAAATCCAACATATAGAACCAGCACTTTTGGTTCGGATCCTTCTCAGACTGTTACTGGATATAGCGTCGTACGTGGTACTCCTATCATGAGGAGATATGAGATTGAAATAGCGTCTACCTAG

Protein Analysis

369

Amino Acids

41.89

Weight (kDa)

7.66

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 28 - 297 1.1e-46 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 30 - 235 4.4e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
AccI GTMKAC 1 cut(s) 1100
AccII CGCG 1 cut(s) 350
AciI CCGC 2 cut(s) 209, 350
AclWI GGATC 4 cut(s) 325, 413, 1016, 1029
AcoI YGGCCR 2 cut(s) 153, 516
AfaI GTAC 7 cut(s) 220, 305, 332, 635, 840, 1056, 1063
AfiI CCNNNNNNNGG 3 cut(s) 558, 724, 858
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 6 cut(s) 244, 698, 743, 921, 987, 1091
AjiI CACGTC 1 cut(s) 631
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AleI CACNNNNGTG 1 cut(s) 624
AluBI AGCT 5 cut(s) 177, 503, 639, 763, 827
AluI AGCT 5 cut(s) 177, 503, 639, 763, 827
Alw21I GWGCWC 3 cut(s) 179, 292, 357
AlwI GGATC 4 cut(s) 325, 413, 1016, 1029
Ama87I CYCGRG 2 cut(s) 718, 851
AoxI GGCC 4 cut(s) 97, 153, 516, 860
ApeKI GCWGC 1 cut(s) 584
Asp700I GAANNNNTTC 1 cut(s) 468
AspS9I GGNCC 2 cut(s) 97, 250
AsuC2I CCSGG 2 cut(s) 576, 747
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 2 cut(s) 718, 851
AvaII GGWCC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 518
BamHI GGATCC 1 cut(s) 1021
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 3 cut(s) 179, 292, 357
BbvCI CCTCAGC 1 cut(s) 602
BbvI GCAGC 1 cut(s) 571
BccI CCATC 3 cut(s) 47, 243, 760
BceAI ACGGC 3 cut(s) 140, 411, 860
BcnI CCSGG 2 cut(s) 576, 747
BfaI CTAG 1 cut(s) 1105
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 576, 747
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 2 cut(s) 718, 851
BmgBI CACGTC 1 cut(s) 631
BmgT120I GGNCC 2 cut(s) 97, 250
BmiI GGNNCC 3 cut(s) 145, 716, 1023
BmrFI CCNGG 2 cut(s) 576, 747
BmsI GCATC 2 cut(s) 469, 933
BplI GAGNNNNNCTC 2 cut(s) 556, 588
Bpu10I CCTNAGC 1 cut(s) 602
BpuMI CCSGG 2 cut(s) 576, 747
BsaAI YACGTR 1 cut(s) 1058
BsaJI CCNNGG 5 cut(s) 100, 719, 746, 852, 876
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 3 cut(s) 558, 724, 858
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 1 cut(s) 1045
Bse3DI GCAATG 1 cut(s) 66
BseDI CCNNGG 5 cut(s) 100, 719, 746, 852, 876
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 3 cut(s) 558, 724, 858
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 4 cut(s) 192, 298, 593, 1043
BseNI ACTGG 1 cut(s) 1045
BseRI GAGGAG 2 cut(s) 800, 1090
BseXI GCAGC 1 cut(s) 571
BsgI GTGCAG 4 cut(s) 135, 570, 918, 951
Bsh1236I CGCG 1 cut(s) 350
Bsh1285I CGRYCG 1 cut(s) 951
BshFI GGCC 4 cut(s) 99, 155, 518, 862
BsiEI CGRYCG 1 cut(s) 951
BsiHKAI GWGCWC 3 cut(s) 179, 292, 357
BsiHKCI CYCGRG 2 cut(s) 718, 851
BsiSI CCGG 4 cut(s) 575, 590, 746, 947
BsiWI CGTACG 1 cut(s) 1054
BslFI GGGAC 3 cut(s) 406, 548, 583
BslI CCNNNNNNNGG 3 cut(s) 558, 724, 858
BsmFI GGGAC 3 cut(s) 406, 548, 583
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 4 cut(s) 99, 155, 518, 862
BsoBI CYCGRG 2 cut(s) 718, 851
Bsp1286I GDGCHC 3 cut(s) 179, 292, 357
Bsp1407I TGTACA 2 cut(s) 633, 838
Bsp143I GATC 4 cut(s) 317, 405, 660, 1021
BspACI CCGC 2 cut(s) 209, 350
BspANI GGCC 4 cut(s) 99, 155, 518, 862
BspCNI CTCAG 4 cut(s) 191, 297, 594, 1042
BspFNI CGCG 1 cut(s) 350
BspHI TCATGA 1 cut(s) 1071
BspLI GGNNCC 3 cut(s) 145, 716, 1023
BspPI GGATC 4 cut(s) 325, 413, 1016, 1029
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 946
BsrGI TGTACA 2 cut(s) 633, 838
BsrI ACTGG 1 cut(s) 1045
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 5 cut(s) 100, 719, 746, 852, 876
BssMI GATC 4 cut(s) 317, 405, 660, 1021
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 1036
BstAPI GCANNNNNTGC 1 cut(s) 943
BstAUI TGTACA 2 cut(s) 633, 838
BstBAI YACGTR 1 cut(s) 1058
BstDEI CTNAG 5 cut(s) 178, 284, 358, 602, 1029
BstDSI CCRYGG 1 cut(s) 876
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 1 cut(s) 350
BstKTI GATC 4 cut(s) 320, 408, 663, 1024
BstMBI GATC 4 cut(s) 317, 405, 660, 1021
BstMCI CGRYCG 1 cut(s) 951
BstMWI GCNNNNNNNGC 1 cut(s) 943
BstSCI CCNGG 2 cut(s) 574, 745
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 571
BstX2I RGATCY 1 cut(s) 1021
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 1021
BsuRI GGCC 4 cut(s) 99, 155, 518, 862
BtgI CCRYGG 1 cut(s) 876
BtrI CACGTC 1 cut(s) 631
BtsCI GGATG 1 cut(s) 484
CciI TCATGA 1 cut(s) 1071
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 2 cut(s) 97, 250
CseI GACGC 2 cut(s) 1039, 1086
Csp6I GTAC 7 cut(s) 219, 304, 331, 634, 839, 1055, 1062
CviAII CATG 5 cut(s) 205, 307, 377, 553, 1072
CviQI GTAC 7 cut(s) 219, 304, 331, 634, 839, 1055, 1062
DdeI CTNAG 5 cut(s) 178, 284, 358, 602, 1029
DpnI GATC 4 cut(s) 319, 407, 662, 1023
DpnII GATC 4 cut(s) 317, 405, 660, 1021
EaeI YGGCCR 2 cut(s) 153, 516
EciI GGCGGA 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 100
Eco147I AGGCCT 1 cut(s) 862
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 177
Eco88I CYCGRG 2 cut(s) 718, 851
EcoICRI GAGCTC 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 5 cut(s) 208, 310, 380, 556, 1075
FaqI GGGAC 3 cut(s) 406, 548, 583
FatI CATG 5 cut(s) 204, 306, 376, 552, 1071
FauNDI CATATG 1 cut(s) 846
FblI GTMKAC 1 cut(s) 1100
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 585
FspBI CTAG 1 cut(s) 1105
GluI GCNGC 1 cut(s) 585
HaeIII GGCC 4 cut(s) 99, 155, 518, 862
HapII CCGG 4 cut(s) 575, 590, 746, 947
HgaI GACGC 2 cut(s) 1039, 1086
Hin1II CATG 5 cut(s) 208, 310, 380, 556, 1075
HincII GTYRAC 1 cut(s) 431
HindII GTYRAC 1 cut(s) 431
HinfI GANTC 6 cut(s) 189, 231, 264, 571, 679, 907
HpaII CCGG 4 cut(s) 575, 590, 746, 947
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 5 cut(s) 48, 431, 634, 839, 1101
Hpy188I TCNGA 5 cut(s) 181, 227, 287, 1021, 1032
Hpy188III TCNNGA 4 cut(s) 683, 698, 718, 1072
Hpy8I GTNNAC 5 cut(s) 48, 431, 634, 839, 1101
Hpy99I CGWCG 1 cut(s) 1055
HpyAV CCTTC 5 cut(s) 663, 669, 887, 927, 1035
HpyCH4III ACNGT 1 cut(s) 1036
HpyCH4IV ACGT 2 cut(s) 630, 1057
HpyCH4V TGCA 6 cut(s) 116, 418, 482, 587, 899, 968
HpyF10VI GCNNNNNNNGC 1 cut(s) 943
HpyF3I CTNAG 5 cut(s) 178, 284, 358, 602, 1029
HpySE526I ACGT 2 cut(s) 630, 1057
Hsp92II CATG 5 cut(s) 208, 310, 380, 556, 1075
Kzo9I GATC 4 cut(s) 317, 405, 660, 1021
LmnI GCTCC 2 cut(s) 174, 958
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 2 cut(s) 469, 933
MaeI CTAG 1 cut(s) 1105
MaeII ACGT 2 cut(s) 630, 1057
MaeIII GTNAC 4 cut(s) 372, 527, 626, 1036
MalI GATC 4 cut(s) 319, 407, 662, 1023
MboI GATC 4 cut(s) 317, 405, 660, 1021
MboII GAAGA 3 cut(s) 240, 434, 745
MflI RGATCY 1 cut(s) 1021
MhlI GDGCHC 3 cut(s) 179, 292, 357
MlsI TGGCCA 1 cut(s) 518
MluCI AATT 3 cut(s) 200, 381, 752
MluNI TGGCCA 1 cut(s) 518
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 2 cut(s) 870, 1016
Mox20I TGGCCA 1 cut(s) 518
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 1 cut(s) 518
MseI TTAA 2 cut(s) 159, 882
MslI CAYNNNNRTG 3 cut(s) 551, 622, 624
Msp20I TGGCCA 1 cut(s) 518
MspI CCGG 4 cut(s) 575, 590, 746, 947
MspR9I CCNGG 2 cut(s) 576, 747
Mva1269I GAATGC 1 cut(s) 651
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 943
NciI CCSGG 2 cut(s) 576, 747
NdeI CATATG 1 cut(s) 846
NdeII GATC 4 cut(s) 317, 405, 660, 1021
NlaIII CATG 5 cut(s) 208, 310, 380, 556, 1075
NlaIV GGNNCC 3 cut(s) 145, 716, 1023
NmuCI GTSAC 1 cut(s) 626
OliI CACNNNNGTG 1 cut(s) 624
PagI TCATGA 1 cut(s) 1071
PceI AGGCCT 1 cut(s) 862
PctI GAATGC 1 cut(s) 651
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 5 cut(s) 189, 231, 264, 679, 907
Pfl23II CGTACG 1 cut(s) 1054
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 1058
PsiI TTATAA 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 179
PspLI CGTACG 1 cut(s) 1054
PspN4I GGNNCC 3 cut(s) 145, 716, 1023
PspPI GGNCC 2 cut(s) 97, 250
PsuI RGATCY 1 cut(s) 1021
RsaI GTAC 7 cut(s) 220, 305, 332, 635, 840, 1056, 1063
RsaNI GTAC 7 cut(s) 219, 304, 331, 634, 839, 1055, 1062
RseI CAYNNNNRTG 3 cut(s) 551, 622, 624
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 159, 882
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 4 cut(s) 317, 405, 660, 1021
Sau96I GGNCC 2 cut(s) 97, 250
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 2 cut(s) 576, 747
SduI GDGCHC 3 cut(s) 179, 292, 357
SfaNI GCATC 2 cut(s) 469, 933
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 3 cut(s) 551, 622, 624
Sse9I AATT 3 cut(s) 200, 381, 752
SseBI AGGCCT 1 cut(s) 862
SsiI CCGC 2 cut(s) 209, 350
SspI AATATT 2 cut(s) 469, 694
SspMI CTAG 1 cut(s) 1105
SstI GAGCTC 1 cut(s) 179
StuI AGGCCT 1 cut(s) 862
StyD4I CCNGG 2 cut(s) 574, 745
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 1036
TaiI ACGT 2 cut(s) 633, 1060
TaqI TCGA 1 cut(s) 192
TasI AATT 3 cut(s) 200, 381, 752
TatI WGTACW 5 cut(s) 218, 303, 330, 633, 838
TfiI GAWTC 5 cut(s) 189, 231, 264, 679, 907
Tru1I TTAA 2 cut(s) 159, 882
Tru9I TTAA 2 cut(s) 159, 882
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 3 cut(s) 17, 193, 393
TspGWI ACGGA 2 cut(s) 156, 242
VpaK11BI GGWCC 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 1100
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 1 cut(s) 1105
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.