pycom15g36860

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000316
Physical Location & Seq
Reverse (-)
36820506 .. 36821602
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 828 bp
ATGGGAAAAGGGAAGGCACAAGAGTTTATCGGATGGGCATCCAAAGCTCTCATTGAGTTCCTGCGATCTATTGGTATAGATACAACCAACAAGTTATCGCAGTATGATGTGGACTCAATCATCTATGATTATATCAAAGAGAGAAACCTTTTTGACCCAATAAAAAAGAAAAAGGTCATATGTGATGAGAAGCTTTATTCTATTTTCGGAAAGAAGTCCGTAGATAGGATAAAAATATATGGTCTTTTGGAGGAACATATGGCCGAGAACTTGGTTATATCGGATGAAGATGACAGTGAGCTGGAAGACAAGAAGAAAGATACAATGATGGCAAGCAAGAAACAAAGAGTGAGCTCAGGTATAGCATCTATTGAAAAGGAAGTGAGTCCTAGTGTCCAGAAAAGTTTTTTTGCATCTATAGTTCCTGAGAATATCAAGCTTGTCTACTTAAGGAGGAGTTTAGTGGAGGAGTTCTTGAAGCAGCCTGAAAACTTTAAAAGCAAGCTACTAGGAACTTTTGTGAGAGTGAAAAATGATGCCAGGCTTCGTCTGACAAATTCTCACCAACTTTTACAAGTTGAAGGTATAAAGAAAGACTCAACAGCTGATGAAATGGACGGTGAAATTCTCCTGCAAGTTTCCAATAGAGATATCCCGATTTGTAGGCTGGCAGATTCAGACTTCACTGAGGTAATTGACCGGTATAAGAATTATTCAGTTTTCTTTATATGTAACATAATTCGCTCAGAAGGTTATGTAATTGGAGAGCTCTCTACTCCTATTAATCAAACCCTCAACCTTCCATCTTTCCTCAGAAGGTTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

276

Amino Acids

31.63

Weight (kDa)

8.23

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 14 - 87 6.9e-14 SWIB/MDM2 domain
Plus-3 PF03126 144 - 230 7.9e-12 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 2 cut(s) 556, 624
AfiI CCNNNNNNNGG 1 cut(s) 225
AflII CTTAAG 1 cut(s) 448
AgeI ACCGGT 1 cut(s) 699
AgsI TTSAA 3 cut(s) 374, 478, 581
AjnI CCWGG 1 cut(s) 539
AluBI AGCT 8 cut(s) 47, 193, 301, 354, 439, 505, 605, 769
AluI AGCT 8 cut(s) 47, 193, 301, 354, 439, 505, 605, 769
Alw21I GWGCWC 2 cut(s) 356, 771
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 2 cut(s) 556, 624
AseI ATTAAT 1 cut(s) 783
AsiGI ACCGGT 1 cut(s) 699
AsuHPI GGTGA 2 cut(s) 554, 632
BanII GRGCYC 2 cut(s) 356, 771
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 356, 771
BbvI GCAGC 1 cut(s) 493
BccI CCATC 3 cut(s) 27, 322, 811
BciT130I CCWGG 1 cut(s) 541
BfaI CTAG 2 cut(s) 390, 509
BfmI CTRYAG 1 cut(s) 417
BfrI CTTAAG 1 cut(s) 448
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
Bme1390I CCNGG 1 cut(s) 541
BmrFI CCNGG 1 cut(s) 541
BmsI GCATC 4 cut(s) 47, 374, 422, 526
BpiI GAAGAC 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 699
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 37
BseBI CCWGG 1 cut(s) 541
BseGI GGATG 3 cut(s) 38, 38, 289
BseJI GATNNNNATC 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 5 cut(s) 369, 417, 678, 759, 826
BseRI GAGGAG 2 cut(s) 469, 482
BseXI GCAGC 1 cut(s) 493
BshFI GGCC 1 cut(s) 263
BshTI ACCGGT 1 cut(s) 699
BsiHKAI GWGCWC 2 cut(s) 356, 771
BsiSI CCGG 1 cut(s) 700
BslI CCNNNNNNNGG 1 cut(s) 225
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 356, 771
Bsp143I GATC 1 cut(s) 65
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 5 cut(s) 368, 418, 679, 758, 825
BspTI CTTAAG 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 699
BssAI RCCGGY 1 cut(s) 699
BssMI GATC 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 2 cut(s) 296, 620
BstAFI CTTAAG 1 cut(s) 448
BstC8I GCNNGC 3 cut(s) 334, 503, 669
BstDEI CTNAG 5 cut(s) 355, 426, 687, 745, 812
BstF5I GGATG 3 cut(s) 38, 38, 289
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 541
BstSCI CCNGG 1 cut(s) 539
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 493
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 3 cut(s) 38, 38, 289
BtsIMutI CAGTG 2 cut(s) 301, 684
Cac8I GCNNGC 3 cut(s) 334, 503, 669
Cfr10I RCCGGY 1 cut(s) 699
CspAI ACCGGT 1 cut(s) 699
DdeI CTNAG 5 cut(s) 355, 426, 687, 745, 812
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
DraI TTTAAA 2 cut(s) 496, 823
EaeI YGGCCR 1 cut(s) 261
Ecl136II GAGCTC 2 cut(s) 354, 769
Eco24I GRGCYC 2 cut(s) 356, 771
Eco32I GATATC 1 cut(s) 652
Eco53kI GAGCTC 2 cut(s) 354, 769
EcoICRI GAGCTC 2 cut(s) 354, 769
EcoRII CCWGG 1 cut(s) 539
EcoRV GATATC 1 cut(s) 652
EcoT38I GRGCYC 2 cut(s) 356, 771
FauNDI CATATG 2 cut(s) 179, 258
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 3 cut(s) 25, 45, 296
FriOI GRGCYC 2 cut(s) 356, 771
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 2 cut(s) 390, 509
GluI GCNGC 1 cut(s) 482
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 700
HindIII AAGCTT 2 cut(s) 191, 437
HinfI GANTC 4 cut(s) 113, 385, 596, 674
HpaII CCGG 1 cut(s) 700
HphI GGTGA 2 cut(s) 554, 632
Hpy166II GTNNAC 2 cut(s) 112, 445
Hpy188I TCNGA 7 cut(s) 32, 209, 283, 552, 679, 748, 815
Hpy188III TCNNGA 4 cut(s) 397, 425, 475, 655
Hpy8I GTNNAC 2 cut(s) 112, 445
HpyAV CCTTC 5 cut(s) 7, 575, 743, 809, 810
HpyCH4III ACNGT 2 cut(s) 296, 620
HpyCH4V TGCA 2 cut(s) 413, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 5 cut(s) 355, 426, 687, 745, 812
Kzo9I GATC 1 cut(s) 65
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 4 cut(s) 47, 374, 422, 526
MaeI CTAG 2 cut(s) 390, 509
MaeIII GTNAC 1 cut(s) 731
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 3 cut(s) 299, 317, 325
MhlI GDGCHC 2 cut(s) 356, 771
MluCI AATT 6 cut(s) 556, 624, 693, 709, 738, 759
MlyI GAGTC 3 cut(s) 107, 394, 590
MnlI CCTC 6 cut(s) 244, 447, 460, 682, 803, 821
MseI TTAA 4 cut(s) 449, 495, 783, 822
MspA1I CMGCKG 1 cut(s) 605
MspCI CTTAAG 1 cut(s) 448
MspI CCGG 1 cut(s) 700
MspR9I CCNGG 1 cut(s) 541
MvaI CCWGG 1 cut(s) 541
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeI CATATG 2 cut(s) 179, 258
NdeII GATC 1 cut(s) 65
NmeAIII GCCGAG 1 cut(s) 289
PfeI GAWTC 1 cut(s) 674
PinAI ACCGGT 1 cut(s) 699
PkrI GCNGC 1 cut(s) 483
PleI GAGTC 3 cut(s) 107, 393, 590
PpsI GAGTC 3 cut(s) 107, 393, 590
PshBI ATTAAT 1 cut(s) 783
Psp124BI GAGCTC 2 cut(s) 356, 771
Psp6I CCWGG 1 cut(s) 539
PspGI CCWGG 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 605
SacI GAGCTC 2 cut(s) 356, 771
SaqAI TTAA 4 cut(s) 449, 495, 783, 822
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 1 cut(s) 65
SchI GAGTC 3 cut(s) 107, 394, 590
ScrFI CCNGG 1 cut(s) 541
SduI GDGCHC 2 cut(s) 356, 771
SfaNI GCATC 4 cut(s) 47, 374, 422, 526
SfcI CTRYAG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 6 cut(s) 556, 624, 693, 709, 738, 759
SspMI CTAG 2 cut(s) 390, 509
SstI GAGCTC 2 cut(s) 356, 771
StyD4I CCNGG 1 cut(s) 539
TaaI ACNGT 2 cut(s) 296, 620
TasI AATT 6 cut(s) 556, 624, 693, 709, 738, 759
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 4 cut(s) 449, 495, 783, 822
Tru9I TTAA 4 cut(s) 449, 495, 783, 822
TscAI CASTG 2 cut(s) 301, 691
TseI GCWGC 1 cut(s) 481
TspDTI ATGAA 2 cut(s) 300, 624
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 2 cut(s) 301, 691
Vha464I CTTAAG 1 cut(s) 448
VspI ATTAAT 1 cut(s) 783
XapI RAATTY 2 cut(s) 556, 624
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 2 cut(s) 390, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.