pycom15g38860

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000316
Physical Location & Seq
Forward (+)
38595970 .. 38597694
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 960 bp
ATGAGTGATAAGAAAATTGTGACCCTTGACCTAAATTTTCTGAATACGCTTGAGCAATACTTGGATAAGAAGCTGCTTCTTGAGAAACCATCAGAACAATTCCGATTAATAAATGAGGTTCCAGAAGTAATTGCAGATATAGAAAAACTTGAACCTACTTCTGAGAACTCTCTAAGCCAGGATCAAACAGAACATGATGGATCGCCTGAATCAGCCCCCAGAGCCAGATGGTCTTCTCAAACTCCCAGAACTGGTCTAGCCAACAGAACTGTCTACCATGCAAAGGGCGGAACAGATCCATCAGGTACAGAAAAATTTAAACCTACTCCTGAGAGCTCTCCAAGGAAGGATAAACAAGAATGTGATGGCTTTCCTGCTTCAGCCTTCGAAGGGTCCTCTCCAACTCCAAACACTAATTTAGCCAATGGAACTTTGTGTCTTCCAAATGGAGGAACTGATCCGGCAGAAGTTCGAGGTGGCATTCGTCAAAAGGAGCACCAATTCGTTCAAGTGAAGAACAAGTCTCATAAAGTCTTGTTCTCTGAAGAGTTTGAAAAAAGACATCTTGATTTTGCTTCTCAAGGTAAACCTGATGTCGACCTGCAAGAGCCGCACCATTTTAGTTCCCATGTCGATATTAAAAGGCAAAGTGAAGAATGTGTTGAGCAAAAATTGAAAAATGAAAGCACATCCAAAGCTGAGTTAATTGAGCTAAGCGATGATGATGAAGATGTACATGATGAAGTTAAAGCACCTGCATCTGAAGACCCAGATTCTGCACTGTGGCATTGTATGAGTCCTCTTGGTGAAACAAGGGGCCCCTATAAAATGTCATTGTTAAGGCAGTGGAACAATTCAAGTCGTCGTCCATTGAAATTCAAGGTTTGGAAGGAGGGTCAAAGCGAGGAAGAGGCAGTGTTTCTTGATGATGCCGTTCGCCAAAGTCTTCCCAGTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GYF Plus-3 SWIB

Protein Analysis

320

Amino Acids

35.86

Weight (kDa)

5.15

Isoelectric Point (pI)

65.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 763
Acc36I ACCTGC 2 cut(s) 609, 763
AccI GTMKAC 2 cut(s) 273, 597
AciI CCGC 2 cut(s) 288, 611
AclWI GGATC 4 cut(s) 189, 208, 290, 452
AcsI RAATTY 3 cut(s) 34, 314, 875
AcuI CTGAAG 3 cut(s) 363, 564, 783
AfaI GTAC 3 cut(s) 307, 735, 955
AfiI CCNNNNNNNGG 4 cut(s) 251, 283, 390, 449
AgsI TTSAA 7 cut(s) 152, 509, 554, 676, 858, 874, 880
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 4 cut(s) 73, 336, 698, 712
AluI AGCT 4 cut(s) 73, 336, 698, 712
Alw21I GWGCWC 2 cut(s) 338, 498
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 4 cut(s) 189, 208, 290, 452
AlwNI CAGNNNCTG 1 cut(s) 776
AoxI GGCC 1 cut(s) 817
ApaI GGGCCC 1 cut(s) 821
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 3 cut(s) 34, 314, 875
AseI ATTAAT 1 cut(s) 107
AspS9I GGNCC 3 cut(s) 393, 817, 818
AsuHPI GGTGA 1 cut(s) 818
AsuII TTCGAA 1 cut(s) 387
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 821
BanII GRGCYC 2 cut(s) 338, 821
BbsI GAAGAC 4 cut(s) 225, 431, 771, 938
Bbv12I GWGCWC 2 cut(s) 338, 498
BbvI GCAGC 1 cut(s) 60
BccI CCATC 5 cut(s) 97, 191, 222, 307, 359
BceAI ACGGC 1 cut(s) 917
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 1 cut(s) 257
BfuAI ACCTGC 2 cut(s) 609, 763
BisI GCNGC 2 cut(s) 74, 611
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 2 cut(s) 75, 612
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 3 cut(s) 393, 817, 818
BmiI GGNNCC 5 cut(s) 120, 394, 818, 819, 820
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 2 cut(s) 767, 919
BmuI ACTGGG 1 cut(s) 945
BpiI GAAGAC 4 cut(s) 225, 431, 771, 938
Bpu1102I GCTNAGC 1 cut(s) 713
Bpu14I TTCGAA 1 cut(s) 387
BpuEI CTTGAG 3 cut(s) 71, 101, 564
BsaAI YACGTR 1 cut(s) 957
BsaJI CCNNGG 1 cut(s) 341
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 283, 390, 449
Bse1I ACTGG 2 cut(s) 256, 951
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 1 cut(s) 689
BseLI CCNNNNNNNGG 4 cut(s) 251, 283, 390, 449
BseMII CTCAG 3 cut(s) 153, 321, 690
BseNI ACTGG 2 cut(s) 256, 951
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 1 cut(s) 819
BsiHKAI GWGCWC 2 cut(s) 338, 498
BsiSI CCGG 1 cut(s) 461
BslI CCNNNNNNNGG 4 cut(s) 251, 283, 390, 449
BsmAI GTCTC 1 cut(s) 528
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 1 cut(s) 819
Bsp119I TTCGAA 1 cut(s) 387
Bsp120I GGGCCC 1 cut(s) 817
Bsp1286I GDGCHC 3 cut(s) 338, 498, 821
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 4 cut(s) 181, 200, 295, 457
Bsp1720I GCTNAGC 1 cut(s) 713
BspACI CCGC 2 cut(s) 288, 611
BspANI GGCC 1 cut(s) 819
BspCNI CTCAG 3 cut(s) 154, 322, 691
BspLI GGNNCC 5 cut(s) 120, 394, 818, 819, 820
BspMI ACCTGC 2 cut(s) 609, 763
BspPI GGATC 4 cut(s) 189, 208, 290, 452
BspT104I TTCGAA 1 cut(s) 387
BsrGI TGTACA 1 cut(s) 733
BsrI ACTGG 2 cut(s) 256, 951
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 4 cut(s) 181, 200, 295, 457
BssT1I CCWWGG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 271, 783
Bst6I CTCTTC 2 cut(s) 540, 903
BstAUI TGTACA 1 cut(s) 733
BstBAI YACGTR 1 cut(s) 957
BstBI TTCGAA 1 cut(s) 387
BstDEI CTNAG 5 cut(s) 162, 173, 330, 699, 713
BstF5I GGATG 1 cut(s) 689
BstKTI GATC 4 cut(s) 184, 203, 298, 460
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 4 cut(s) 181, 200, 295, 457
BstMWI GCNNNNNNNGC 2 cut(s) 221, 610
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 821
BstSNI TACGTA 1 cut(s) 957
BstV1I GCAGC 1 cut(s) 60
BstV2I GAAGAC 4 cut(s) 225, 431, 771, 938
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 819
BtgZI GCGATG 1 cut(s) 732
BtsCI GGATG 1 cut(s) 689
BtsI GCAGTG 2 cut(s) 851, 921
BtsIMutI CAGTG 3 cut(s) 779, 851, 921
BveI ACCTGC 2 cut(s) 609, 763
CaiI CAGNNNCTG 1 cut(s) 776
Cfr13I GGNCC 3 cut(s) 393, 817, 818
Csp6I GTAC 3 cut(s) 306, 734, 954
CviAII CATG 4 cut(s) 194, 278, 629, 737
CviQI GTAC 3 cut(s) 306, 734, 954
DdeI CTNAG 5 cut(s) 162, 173, 330, 699, 713
DpnI GATC 4 cut(s) 183, 202, 297, 459
DpnII GATC 4 cut(s) 181, 200, 295, 457
DraI TTTAAA 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 540, 903
EarI CTCTTC 2 cut(s) 540, 903
EciI GGCGGA 1 cut(s) 303
Ecl136II GAGCTC 1 cut(s) 336
Eco105I TACGTA 1 cut(s) 957
Eco130I CCWWGG 1 cut(s) 341
Eco24I GRGCYC 2 cut(s) 338, 821
Eco47I GGWCC 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 336
Eco57I CTGAAG 3 cut(s) 363, 564, 783
EcoICRI GAGCTC 1 cut(s) 336
EcoO109I RGGNCCY 3 cut(s) 393, 817, 818
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 341
EcoT38I GRGCYC 2 cut(s) 338, 821
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 4 cut(s) 197, 281, 632, 740
FaiI YATR 8 cut(s) 140, 195, 279, 528, 630, 738, 794, 825
FatI CATG 4 cut(s) 193, 277, 628, 736
FblI GTMKAC 2 cut(s) 273, 597
Fnu4HI GCNGC 2 cut(s) 74, 611
FokI GGATG 1 cut(s) 676
FriOI GRGCYC 2 cut(s) 338, 821
Fsp4HI GCNGC 2 cut(s) 74, 611
FspBI CTAG 1 cut(s) 257
GluI GCNGC 2 cut(s) 74, 611
HaeIII GGCC 1 cut(s) 819
HapII CCGG 1 cut(s) 461
Hin1II CATG 4 cut(s) 197, 281, 632, 740
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 3 cut(s) 209, 773, 796
HpaII CCGG 1 cut(s) 461
HphI GGTGA 1 cut(s) 818
Hpy166II GTNNAC 3 cut(s) 274, 587, 598
Hpy188I TCNGA 6 cut(s) 42, 94, 104, 163, 544, 763
Hpy188III TCNNGA 5 cut(s) 80, 122, 329, 566, 923
Hpy8I GTNNAC 3 cut(s) 274, 587, 598
Hpy99I CGWCG 1 cut(s) 867
HpyAV CCTTC 4 cut(s) 340, 383, 394, 883
HpyCH4III ACNGT 2 cut(s) 271, 783
HpyCH4IV ACGT 1 cut(s) 956
HpyCH4V TGCA 5 cut(s) 134, 281, 604, 758, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 610
HpyF3I CTNAG 5 cut(s) 162, 173, 330, 699, 713
HpySE526I ACGT 1 cut(s) 956
Hsp92II CATG 4 cut(s) 197, 281, 632, 740
Kzo9I GATC 4 cut(s) 181, 200, 295, 457
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 2 cut(s) 767, 919
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 956
MaeIII GTNAC 1 cut(s) 19
MalI GATC 4 cut(s) 183, 202, 297, 459
MboI GATC 4 cut(s) 181, 200, 295, 457
MboII GAAGA 9 cut(s) 225, 431, 526, 557, 665, 740, 776, 920, 938
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 3 cut(s) 338, 498, 821
MlyI GAGTC 1 cut(s) 805
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 8 cut(s) 109, 406, 443, 467, 810, 886, 898, 904
MseI TTAA 6 cut(s) 107, 318, 639, 704, 747, 839
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 221, 610
NdeII GATC 4 cut(s) 181, 200, 295, 457
NlaIII CATG 4 cut(s) 197, 281, 632, 740
NlaIV GGNNCC 5 cut(s) 120, 394, 818, 819, 820
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 387
PaqCI CACCTGC 1 cut(s) 763
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 2 cut(s) 209, 773
PkrI GCNGC 2 cut(s) 75, 612
PleI GAGTC 1 cut(s) 804
PpsI GAGTC 1 cut(s) 804
Ppu21I YACGTR 1 cut(s) 957
PpuMI RGGWCCY 1 cut(s) 393
PshBI ATTAAT 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 5 cut(s) 120, 394, 818, 819, 820
PspOMI GGGCCC 1 cut(s) 817
PspPI GGNCC 3 cut(s) 393, 817, 818
PspPPI RGGWCCY 1 cut(s) 393
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 3 cut(s) 307, 735, 955
RsaNI GTAC 3 cut(s) 306, 734, 954
SacI GAGCTC 1 cut(s) 338
SalI GTCGAC 1 cut(s) 596
SaqAI TTAA 6 cut(s) 107, 318, 639, 704, 747, 839
SatI GCNGC 2 cut(s) 74, 611
Sau3AI GATC 4 cut(s) 181, 200, 295, 457
Sau96I GGNCC 3 cut(s) 393, 817, 818
SchI GAGTC 1 cut(s) 805
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 3 cut(s) 338, 498, 821
SfaNI GCATC 2 cut(s) 767, 919
SfuI TTCGAA 1 cut(s) 387
SinI GGWCC 1 cut(s) 393
SmlI CTYRAG 3 cut(s) 50, 80, 579
SmoI CTYRAG 3 cut(s) 50, 80, 579
SnaBI TACGTA 1 cut(s) 957
SsiI CCGC 2 cut(s) 288, 611
SspMI CTAG 1 cut(s) 257
SstI GAGCTC 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 2 cut(s) 271, 783
TaiI ACGT 1 cut(s) 959
TaqI TCGA 4 cut(s) 387, 472, 597, 633
TatI WGTACW 1 cut(s) 733
TauI GCSGC 1 cut(s) 613
TfiI GAWTC 2 cut(s) 209, 773
Tru1I TTAA 6 cut(s) 107, 318, 639, 704, 747, 839
Tru9I TTAA 6 cut(s) 107, 318, 639, 704, 747, 839
TscAI CASTG 3 cut(s) 786, 851, 921
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 696, 741, 756
TspRI CASTG 3 cut(s) 786, 851, 921
VpaK11BI GGWCC 1 cut(s) 393
VspI ATTAAT 1 cut(s) 107
XapI RAATTY 3 cut(s) 34, 314, 875
XmiI GTMKAC 2 cut(s) 273, 597
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.