pycom16g07740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000475
Physical Location & Seq
Forward (+)
5090626 .. 5091688
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGGAGATACCAAGATTTTCCGAGATGAATCTGTGGTTTCGTGACACCATTGGCGTAATCGGATCGGCCGCGAAAATCCCACTTCGAAATCCCAGTTTCATAACATTCGTGCTGGTTACCTCCTTTCCACTATTTTGTACGACTTTAGTACCAAGATTGCCTTCTAGCCAGCCTTCTTTGATCATGGAGAAGGCAGCAATTCAGCTAAGAGTTCTTACTCACCACCCCAAAGGCCACATGATTCAACTTCTGCGAGTGTACCTTTTTGAACTTGTTAATTTCTTCACCGCACTGACAACTATATATGCTGCTTCAACAGTCTACATTAGTAGTGATAGGTGGAAGGTGAGTCTCCGAGATCTTCTTCGAAACTCAATAACAAAAACAAGGTGGCGCGAGCCCATGTTTACATTCTTGACCATGTCCCTCTTGTCACACATTTGTTTAAGTTCTGTTTACTATTGGCATCATCACGCGAAGCCATTACTTTCGTCAAGCTGCTCAAACAGGTTACTGCAGGCTGTAAACATGGTAGTTCCTTTTGTGGCCTTTGATAAATGGGTAGAGTACAGCGCTTGGTGGAATCTGAGTGTTGTGGTTTCCATTTTAGAGAAGGATAACAGAGGTTTCGAAGCCTTTTCAGATGCAGCGGAGTTGAGCGAAGGAAATACAAGAAGAGGGTTCGTTTTGATGCTTTTGTATTCTGTTTGGAGCTTCCGTTTTCCGACCCTCATTGCAAAATGCACTTTTCCAAGTCGAACGTGTACCATTGTCAACTGGAATATTACTAAAACGTATACCGGGCTACCCTATAACTTGAAGAGGAAGGAGTACCATAATTGCGAGAATTGCAGCAGAGATCGACAAAGGTTGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.93

Weight (kDa)

9.68

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 321, 797
AccII CGCG 3 cut(s) 71, 396, 476
AciI CCGC 3 cut(s) 69, 288, 650
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 66
AfaI GTAC 6 cut(s) 139, 150, 260, 569, 766, 833
AfeI AGCGCT 1 cut(s) 574
AflIII ACRYGT 1 cut(s) 761
AgsI TTSAA 4 cut(s) 245, 269, 315, 820
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 3 cut(s) 205, 498, 714
AluI AGCT 3 cut(s) 205, 498, 714
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 1 cut(s) 70
Aor51HI AGCGCT 1 cut(s) 574
AoxI GGCC 3 cut(s) 66, 232, 546
ApeKI GCWGC 5 cut(s) 194, 308, 498, 647, 852
AspLEI GCGC 2 cut(s) 396, 575
AsuC2I CCSGG 1 cut(s) 802
AsuHPI GGTGA 3 cut(s) 212, 277, 358
AsuII TTCGAA 3 cut(s) 85, 367, 630
BaeI ACNNNNGTAYC 2 cut(s) 132, 165
BanII GRGCYC 1 cut(s) 402
BbvI GCAGC 5 cut(s) 206, 295, 485, 659, 864
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 1 cut(s) 802
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 2 cut(s) 165, 877
BfmI CTRYAG 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 576
BglII AGATCT 1 cut(s) 358
BisI GCNGC 6 cut(s) 69, 195, 309, 499, 648, 853
BlsI GCNGC 6 cut(s) 70, 196, 310, 500, 649, 854
Bme1390I CCNGG 1 cut(s) 802
BmrFI CCNGG 1 cut(s) 802
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 3 cut(s) 475, 634, 681
BmuI ACTGGG 1 cut(s) 87
Bpu14I TTCGAA 3 cut(s) 85, 367, 630
BpuMI CCSGG 1 cut(s) 802
BsaXI ACNNNNNCTCC 2 cut(s) 703, 733
Bse1I ACTGG 2 cut(s) 93, 782
Bse3DI GCAATG 1 cut(s) 732
BseMI GCAATG 1 cut(s) 732
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 2 cut(s) 93, 782
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 5 cut(s) 206, 295, 485, 659, 864
Bsh1236I CGCG 3 cut(s) 71, 396, 476
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 68, 234, 548
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 801
BslFI GGGAC 1 cut(s) 409
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 3 cut(s) 68, 234, 548
Bsp119I TTCGAA 3 cut(s) 85, 367, 630
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 4 cut(s) 62, 180, 358, 859
BspACI CCGC 3 cut(s) 69, 288, 650
BspANI GGCC 3 cut(s) 68, 234, 548
BspCNI CTCAG 1 cut(s) 579
BspFNI CGCG 3 cut(s) 71, 396, 476
BspMAI CTGCAG 1 cut(s) 519
BspPI GGATC 1 cut(s) 70
BspT104I TTCGAA 3 cut(s) 85, 367, 630
BsrDI GCAATG 1 cut(s) 732
BsrI ACTGG 2 cut(s) 93, 782
BssMI GATC 4 cut(s) 62, 180, 358, 859
BssNAI GTATAC 1 cut(s) 798
Bst1107I GTATAC 1 cut(s) 798
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 2 cut(s) 670, 815
BstBI TTCGAA 3 cut(s) 85, 367, 630
BstC8I GCNNGC 3 cut(s) 170, 398, 519
BstDEI CTNAG 2 cut(s) 206, 587
BstEII GGTNACC 1 cut(s) 115
BstFNI CGCG 3 cut(s) 71, 396, 476
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 2 cut(s) 396, 575
BstKTI GATC 4 cut(s) 65, 183, 361, 862
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 4 cut(s) 62, 180, 358, 859
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 849
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 800
BstSFI CTRYAG 1 cut(s) 515
BstUI CGCG 3 cut(s) 71, 396, 476
BstV1I GCAGC 5 cut(s) 206, 295, 485, 659, 864
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BstZ17I GTATAC 1 cut(s) 798
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 3 cut(s) 68, 234, 548
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 3 cut(s) 170, 398, 519
CfoI GCGC 2 cut(s) 396, 575
Csp6I GTAC 6 cut(s) 138, 149, 259, 568, 765, 832
CviAII CATG 5 cut(s) 184, 238, 403, 421, 529
CviQI GTAC 6 cut(s) 138, 149, 259, 568, 765, 832
DdeI CTNAG 2 cut(s) 206, 587
DpnI GATC 4 cut(s) 64, 182, 360, 861
DpnII GATC 4 cut(s) 62, 180, 358, 859
EaeI YGGCCR 1 cut(s) 66
EagI CGGCCG 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 670, 815
EarI CTCTTC 2 cut(s) 670, 815
EclXI CGGCCG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 402
Eco47III AGCGCT 1 cut(s) 574
Eco52I CGGCCG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 5 cut(s) 187, 241, 406, 424, 532
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FaqI GGGAC 1 cut(s) 409
FatI CATG 5 cut(s) 183, 237, 402, 420, 528
FbaI TGATCA 1 cut(s) 180
FblI GTMKAC 2 cut(s) 321, 797
Fnu4HI GCNGC 6 cut(s) 69, 195, 309, 499, 648, 853
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 6 cut(s) 69, 195, 309, 499, 648, 853
FspBI CTAG 2 cut(s) 165, 877
GlaI GCGC 2 cut(s) 395, 574
GluI GCNGC 6 cut(s) 69, 195, 309, 499, 648, 853
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 3 cut(s) 68, 234, 548
HapII CCGG 1 cut(s) 801
HhaI GCGC 2 cut(s) 396, 575
Hin1II CATG 5 cut(s) 187, 241, 406, 424, 532
Hin6I GCGC 2 cut(s) 394, 573
HinP1I GCGC 2 cut(s) 394, 573
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 4 cut(s) 28, 241, 349, 583
HpaII CCGG 1 cut(s) 801
HphI GGTGA 3 cut(s) 212, 277, 358
Hpy166II GTNNAC 8 cut(s) 259, 322, 408, 457, 526, 765, 775, 798
Hpy188I TCNGA 6 cut(s) 22, 62, 356, 588, 643, 726
Hpy188III TCNNGA 2 cut(s) 41, 415
Hpy8I GTNNAC 8 cut(s) 259, 322, 408, 457, 526, 765, 775, 798
HpyAV CCTTC 7 cut(s) 171, 183, 184, 337, 607, 656, 820
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 2 cut(s) 761, 794
HpyCH4V TGCA 5 cut(s) 517, 647, 737, 744, 852
HpyF10VI GCNNNNNNNGC 1 cut(s) 849
HpyF3I CTNAG 2 cut(s) 206, 587
HpySE526I ACGT 2 cut(s) 761, 794
Hsp92II CATG 5 cut(s) 187, 241, 406, 424, 532
HspAI GCGC 2 cut(s) 394, 573
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 4 cut(s) 62, 180, 358, 859
LmnI GCTCC 1 cut(s) 711
LpnPI CCDG 7 cut(s) 98, 106, 182, 493, 503, 763, 814
Lsp1109I GCAGC 5 cut(s) 206, 295, 485, 659, 864
LweI GCATC 3 cut(s) 475, 634, 681
MaeI CTAG 2 cut(s) 165, 877
MaeII ACGT 2 cut(s) 761, 794
MaeIII GTNAC 4 cut(s) 41, 115, 432, 510
MalI GATC 4 cut(s) 64, 182, 360, 861
MboI GATC 4 cut(s) 62, 180, 358, 859
MboII GAAGA 5 cut(s) 274, 353, 356, 687, 832
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 4 cut(s) 198, 277, 838, 847
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 749
MnlI CCTC 6 cut(s) 130, 437, 617, 671, 740, 816
MseI TTAA 2 cut(s) 276, 446
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 1 cut(s) 801
MspR9I CCNGG 1 cut(s) 802
MvnI CGCG 3 cut(s) 71, 396, 476
MwoI GCNNNNNNNGC 1 cut(s) 849
NciI CCSGG 1 cut(s) 802
NdeII GATC 4 cut(s) 62, 180, 358, 859
NlaIII CATG 5 cut(s) 187, 241, 406, 424, 532
NmuCI GTSAC 2 cut(s) 41, 432
NspV TTCGAA 3 cut(s) 85, 367, 630
PfeI GAWTC 3 cut(s) 28, 241, 583
PflFI GACNNNGTC 1 cut(s) 421
PkrI GCNGC 6 cut(s) 70, 196, 310, 500, 649, 854
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
PspEI GGTNACC 1 cut(s) 115
PstI CTGCAG 1 cut(s) 519
PsuI RGATCY 1 cut(s) 358
PsyI GACNNNGTC 1 cut(s) 421
RsaI GTAC 6 cut(s) 139, 150, 260, 569, 766, 833
RsaNI GTAC 6 cut(s) 138, 149, 259, 568, 765, 832
SaqAI TTAA 2 cut(s) 276, 446
SatI GCNGC 6 cut(s) 69, 195, 309, 499, 648, 853
Sau3AI GATC 4 cut(s) 62, 180, 358, 859
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 802
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 3 cut(s) 475, 634, 681
SfcI CTRYAG 1 cut(s) 515
SfuI TTCGAA 3 cut(s) 85, 367, 630
Sse9I AATT 4 cut(s) 198, 277, 838, 847
SsiI CCGC 3 cut(s) 69, 288, 650
SspI AATATT 1 cut(s) 784
SspMI CTAG 2 cut(s) 165, 877
StyD4I CCNGG 1 cut(s) 800
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 2 cut(s) 764, 797
TaqI TCGA 5 cut(s) 85, 367, 630, 757, 862
TasI AATT 4 cut(s) 198, 277, 838, 847
TatI WGTACW 1 cut(s) 567
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 3 cut(s) 28, 241, 583
Tru1I TTAA 2 cut(s) 276, 446
Tru9I TTAA 2 cut(s) 276, 446
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 2 cut(s) 41, 432
TseI GCWGC 5 cut(s) 194, 308, 498, 647, 852
Tsp45I GTSAC 2 cut(s) 41, 432
TspDTI ATGAA 2 cut(s) 41, 88
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 1 cut(s) 297
Tth111I GACNNNGTC 1 cut(s) 421
XmiI GTMKAC 2 cut(s) 321, 797
XspI CTAG 2 cut(s) 165, 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.