pycom17g07270

Ankyrin repeat-containing protein At3g12360-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000724
Physical Location & Seq
Reverse (-)
5202951 .. 5218303
15353 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
ATGGAGTCCCAGAGAACGCCCACTGTTCCACCATGTCAAAATGAGGAAGACGACCTAAAGAATAAGGTAGCAAGATTAGAAGACATGAAAATCCCTTATGAACATTTCATACAGGGTAACTGGGAAGGCGTGAAGAAATACTATGAGAGGCATCCGGCAAAATTGCTCAGGCCAATGACGCTGAACGGGAACAATGTACTTCACCTTGCGGCTTCTTGCAGCAGCAACTGTCAAAGAGACCTCAAATTTCTTATTGATATATGCAGCGGTTCAACCAGCAACATGAGTTGTTCTTTGAGGATTCCGAATAATGACGGAAACAATGTTCTTCACCAGGTGGCTGTGTCCGGCAGTGTGGAAGCGGCTGAGTTCTTGGTGAACAAATACAACGACCCTGTCCCAGACATTTGTCATACTGATGAAGAGAATGATACGCAGCCGCTGCTGTGGACTCGGAACAAATTAGGAGAAACTCCACTGTACAGAACGGCTGCTTTCGGTCACACTAAATTGGTCAAGTTTTACTGTGACAAACTGAAGGCAGAAAGTCCGGACAATCTAATTAAGAAGCAGTTCAAGAGATCTGACAAAATCTCCATTCTTCATATTGCTGTCATCGCCCAACATTTTGAGACTGCTTATTGGTTGCTAAAGAGGTACAGGAATCTAGGAAAAAGGAGAGACGCAGAAGGATTGACAAGCCTTCAGTTGTTAGCCCAAATGCCAACTCAGCCCTTGAGCCACGGTTTCAAGAAAGCCAATGGAAGATGCTCATTTATCATTGCCTTCCTGATGGAGGTGATGTGGTCACACCAAATCAGAAGGATGATGTGGAGAGCAGCACGGGTAGCCACCATCCCCGTCAATCCATCTTTCGGAACAAGTTTTCAGTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

300

Amino Acids

34.19

Weight (kDa)

9.13

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 42 - 131 9.7e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 550
AciI CCGC 4 cut(s) 209, 267, 362, 440
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 2 cut(s) 557, 689
AdeI CACNNNGTG 1 cut(s) 337
AfaI GTAC 3 cut(s) 198, 482, 659
AfiI CCNNNNNNNGG 2 cut(s) 796, 875
AgsI TTSAA 3 cut(s) 273, 577, 751
AjnI CCWGG 1 cut(s) 333
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
Alw26I GTCTC 3 cut(s) 231, 626, 675
AlwNI CAGNNNCTG 2 cut(s) 228, 442
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 7 cut(s) 219, 222, 264, 436, 442, 491, 839
ApoI RAATTY 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 572
AsuHPI GGTGA 4 cut(s) 194, 323, 388, 811
BbsI GAAGAC 2 cut(s) 54, 87
BbvI GCAGC 7 cut(s) 231, 234, 276, 429, 448, 478, 851
BccI CCATC 3 cut(s) 787, 863, 877
BceAI ACGGC 1 cut(s) 504
BciT130I CCWGG 1 cut(s) 335
BcoDI GTCTC 3 cut(s) 231, 626, 675
BfaI CTAG 1 cut(s) 668
BglII AGATCT 1 cut(s) 581
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 160, 758
BmuI ACTGGG 1 cut(s) 130
BoxI GACNNNNGTC 1 cut(s) 408
BpiI GAAGAC 2 cut(s) 54, 87
Bpu10I CCTNAGC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 757
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 742
BsaWI WCCGGW 1 cut(s) 550
BsaXI ACNNNNNCTCC 4 cut(s) 578, 608, 788, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 796, 875
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 780
BseAI TCCGGA 1 cut(s) 550
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 742
BseGI GGATG 3 cut(s) 151, 831, 855
BseLI CCNNNNNNNGG 2 cut(s) 796, 875
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 3 cut(s) 181, 357, 743
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 7 cut(s) 231, 234, 276, 429, 448, 478, 851
BshFI GGCC 1 cut(s) 172
BsiSI CCGG 3 cut(s) 155, 348, 551
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 796, 875
BsmAI GTCTC 3 cut(s) 231, 626, 675
BsmBI CGTCTC 1 cut(s) 675
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 1 cut(s) 172
Bso31I GGTCTC 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 1 cut(s) 581
BspACI CCGC 4 cut(s) 209, 267, 362, 440
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 3 cut(s) 180, 358, 742
BspEI TCCGGA 1 cut(s) 550
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 780
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 5 cut(s) 25, 230, 480, 527, 746
Bst6I CTCTTC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 442
BstAUI TGTACA 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 167, 366, 729
BstDSI CCRYGG 1 cut(s) 742
BstENI CCTNNNNNAGG 1 cut(s) 794
BstF5I GGATG 3 cut(s) 151, 831, 855
BstKTI GATC 1 cut(s) 584
BstMAI GTCTC 3 cut(s) 231, 626, 675
BstMBI GATC 1 cut(s) 581
BstMWI GCNNNNNNNGC 5 cut(s) 178, 442, 617, 730, 848
BstNI CCWGG 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 7 cut(s) 231, 234, 276, 429, 448, 478, 851
BstV2I GAAGAC 2 cut(s) 54, 87
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
BsuRI GGCC 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 742
BtgZI GCGATG 1 cut(s) 601
BtsCI GGATG 3 cut(s) 151, 831, 855
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 3 cut(s) 21, 358, 476
CaiI CAGNNNCTG 2 cut(s) 228, 442
CseI GACGC 2 cut(s) 187, 692
CsiI ACCWGGT 1 cut(s) 333
Csp6I GTAC 3 cut(s) 197, 481, 658
CviAII CATG 3 cut(s) 33, 85, 283
CviQI GTAC 3 cut(s) 197, 481, 658
DdeI CTNAG 3 cut(s) 167, 366, 729
DpnI GATC 1 cut(s) 583
DpnII GATC 1 cut(s) 581
DraIII CACNNNGTG 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 231
Eco57I CTGAAG 2 cut(s) 557, 689
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoRII CCWGG 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 675
FaeI CATG 3 cut(s) 36, 88, 286
FaqI GGGAC 1 cut(s) 383
FatI CATG 3 cut(s) 32, 84, 282
FokI GGATG 3 cut(s) 138, 838, 842
FspBI CTAG 1 cut(s) 668
HaeIII GGCC 1 cut(s) 172
HapII CCGG 3 cut(s) 155, 348, 551
HgaI GACGC 2 cut(s) 187, 692
Hin1II CATG 3 cut(s) 36, 88, 286
HinfI GANTC 4 cut(s) 5, 301, 451, 664
HpaII CCGG 3 cut(s) 155, 348, 551
HphI GGTGA 4 cut(s) 194, 323, 388, 811
Hpy166II GTNNAC 2 cut(s) 379, 450
Hpy188I TCNGA 5 cut(s) 306, 456, 586, 821, 878
Hpy188III TCNNGA 4 cut(s) 551, 577, 751, 790
Hpy8I GTNNAC 2 cut(s) 379, 450
HpyAV CCTTC 6 cut(s) 119, 532, 683, 713, 796, 816
HpyCH4III ACNGT 5 cut(s) 25, 230, 480, 527, 746
HpyCH4V TGCA 2 cut(s) 219, 264
HpyF10VI GCNNNNNNNGC 5 cut(s) 178, 442, 617, 730, 848
HpyF3I CTNAG 3 cut(s) 167, 366, 729
Hsp92II CATG 3 cut(s) 36, 88, 286
Kpn2I TCCGGA 1 cut(s) 550
Kzo9I GATC 1 cut(s) 581
Lsp1109I GCAGC 7 cut(s) 231, 234, 276, 429, 448, 478, 851
LweI GCATC 2 cut(s) 160, 758
MabI ACCWGGT 1 cut(s) 333
MaeI CTAG 1 cut(s) 668
MaeIII GTNAC 4 cut(s) 116, 500, 527, 807
MalI GATC 1 cut(s) 583
MboI GATC 1 cut(s) 581
MboII GAAGA 7 cut(s) 59, 92, 145, 320, 434, 593, 777
MflI RGATCY 1 cut(s) 581
MluCI AATT 5 cut(s) 161, 245, 461, 509, 561
MlyI GAGTC 2 cut(s) 14, 445
MnlI CCTC 6 cut(s) 37, 141, 251, 291, 648, 790
MroI TCCGGA 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 1 cut(s) 564
MslI CAYNNNNRTG 1 cut(s) 417
MspA1I CMGCKG 2 cut(s) 267, 442
MspI CCGG 3 cut(s) 155, 348, 551
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 5 cut(s) 178, 442, 617, 730, 848
NdeII GATC 1 cut(s) 581
NlaIII CATG 3 cut(s) 36, 88, 286
NmuCI GTSAC 3 cut(s) 500, 527, 807
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 301, 664
PflFI GACNNNGTC 1 cut(s) 395
PleI GAGTC 2 cut(s) 13, 445
PpsI GAGTC 2 cut(s) 13, 445
PshAI GACNNNNGTC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PstNI CAGNNNCTG 2 cut(s) 228, 442
PsuI RGATCY 1 cut(s) 581
PsyI GACNNNGTC 1 cut(s) 395
RsaI GTAC 3 cut(s) 198, 482, 659
RsaNI GTAC 3 cut(s) 197, 481, 658
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 1 cut(s) 564
Sau3AI GATC 1 cut(s) 581
SchI GAGTC 2 cut(s) 14, 445
ScrFI CCNGG 1 cut(s) 335
SetI ASST 7 cut(s) 57, 69, 207, 243, 339, 659, 801
SexAI ACCWGGT 1 cut(s) 333
SfaNI GCATC 2 cut(s) 160, 758
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
Sse9I AATT 5 cut(s) 161, 245, 461, 509, 561
SsiI CCGC 4 cut(s) 209, 267, 362, 440
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 5 cut(s) 25, 230, 480, 527, 746
TaqII GACCGA 1 cut(s) 488
TasI AATT 5 cut(s) 161, 245, 461, 509, 561
TatI WGTACW 2 cut(s) 196, 480
TauI GCSGC 3 cut(s) 212, 365, 442
TfiI GAWTC 2 cut(s) 301, 664
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 3 cut(s) 28, 358, 483
TseFI GTSAC 3 cut(s) 500, 527, 807
TseI GCWGC 7 cut(s) 219, 222, 264, 436, 442, 491, 839
Tsp45I GTSAC 3 cut(s) 500, 527, 807
TspDTI ATGAA 5 cut(s) 97, 101, 114, 435, 593
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 3 cut(s) 28, 358, 483
Tth111I GACNNNGTC 1 cut(s) 395
XagI CCTNNNNNAGG 1 cut(s) 794
XapI RAATTY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.