pycom17g07290

Ankyrin repeat-containing protein At3g12360-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000724
Physical Location & Seq
Reverse (-)
5230508 .. 5232464
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1236 bp
ATGAGAACTTTGACCTGGAAGCTTCAGATTTCTTCGCCGGAGAAGACTTCTTCGCTATGCTTGAGGAATTTGACAAGACTTATGATTAGTTTGTTGGAAAATTATGTAGACAACAACCGCCGCATTACATGCCCCAAGCTATCTAGTACACTACAAATGGCGTACTGGAAAACGCTAACGGATCGGCCGGATCGGATGAAAGAGAGAGTGGATAGCTGTCGGCCGGATCAGAAAGAGAGATTAAGGAAAATGCAAGACTTGAAAGATTCCTATAAATATGCCATGAATGAGGAATGGGAATGGGAACGGCTGAAGGAAAAGTTCGAGAATCATCCGGAAAAACTGCTCGATGAAATGACAGTGGACGGGGACACTGTATTTCACCTTGCGGCTTCTTGCAGCAGCAAATCAGGTAAAGAAGTCCTCGAAAAGGTTATCAATATACTCAATTCAACCAATGAAAAGATAAAGGCTCTAAGGTTTCCTAATAAGTACGGAAACAATACTCTCCACGAGGTGAGTGTGTCCGGCAATAAGGAAGCGGCAGAGTACCTGGTGAGCAAATTCAACGAGCCTGTTCCAGAAGAGGCCAGGATGATCAGTACTAGTAGTACTGATAAAGACAATTATGCGCGGAAGCTGCTGGATCTGGAGGGTCGGGATTCAGAGAATTATGCGCTGCAGCTGCTGGAGACACGGAACTATTTAGGAGAAACTCCGCTCTTCAGGGCGGCTGCTCTCGGTCACACTGACTTGGTGAAGTTTTATGCCGACAAACTACAGGATCAGGAGGACAATCTTTGGAGGCACTTCCACAGAGATGACAAAATGTCCATTCTTCATATCACAGTCGTTGCGCAACATTTTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAACTCAGACAGCTATTTGGTTACTGGAGAAATACCCATATCTAGCGCTCCTTAAGGAAGATAAAGGATTGACAAGCCTTCATTTGCTAGCCCAAATGCCAACTGCCTTTGACCCAAAATTTAAAGAAAGCAAATGGAAGATGCTTATTTATCATTGTACGTACCATTACTCTACAAACTGCTATGTGTGCGCACGTCTTCCCGACGGAGGAAATGTGGTCACACCAAATCAGAAGAATGATGTGGAGAGCGGCATGGATGGCAACCATCCCCGTCTATCCATCTTTCGGAACAAGCTCGCAGGTAATCAAATTTGTAATCTAATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

412

Amino Acids

47.63

Weight (kDa)

8.26

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 858, 1096
Acc36I ACCTGC 1 cut(s) 1196
AccBSI CCGCTC 2 cut(s) 721, 1155
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 634
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 8 cut(s) 118, 121, 389, 542, 634, 719, 731, 1155
AclWI GGATC 5 cut(s) 189, 198, 234, 654, 792
AcoI YGGCCR 2 cut(s) 185, 221
AcsI RAATTY 4 cut(s) 67, 563, 1022, 1215
AcuI CTGAAG 3 cut(s) 8, 332, 709
AdeI CACNNNGTG 1 cut(s) 517
AfaI GTAC 8 cut(s) 148, 164, 494, 551, 604, 613, 1063, 1067
AfeI AGCGCT 1 cut(s) 951
AfiI CCNNNNNNNGG 3 cut(s) 430, 1112, 1191
AflII CTTAAG 1 cut(s) 956
AgsI TTSAA 3 cut(s) 262, 453, 568
AhdI GACNNNNNGTC 1 cut(s) 829
AhlI ACTAGT 1 cut(s) 605
AjiI CACGTC 1 cut(s) 1100
AjnI CCWGG 3 cut(s) 14, 552, 590
AluBI AGCT 7 cut(s) 22, 139, 216, 640, 685, 917, 1201
AluI AGCT 7 cut(s) 22, 139, 216, 640, 685, 917, 1201
Alw26I GTCTC 2 cut(s) 686, 875
AlwI GGATC 5 cut(s) 189, 198, 234, 654, 792
AlwNI CAGNNNCTG 1 cut(s) 688
Aor13HI TCCGGA 1 cut(s) 334
Aor51HI AGCGCT 1 cut(s) 951
AoxI GGCC 3 cut(s) 185, 221, 588
ApeKI GCWGC 7 cut(s) 399, 402, 640, 679, 682, 685, 734
ApoI RAATTY 4 cut(s) 67, 563, 1022, 1215
AseI ATTAAT 1 cut(s) 1230
AspLEI GCGC 5 cut(s) 634, 679, 859, 952, 1097
AsuHPI GGTGA 4 cut(s) 374, 529, 568, 769
AsuNHI GCTAGC 1 cut(s) 991
BauI CACGAG 1 cut(s) 512
BbsI GAAGAC 2 cut(s) 50, 1094
BbvI GCAGC 7 cut(s) 411, 414, 627, 666, 672, 694, 721
BccI CCATC 3 cut(s) 1157, 1179, 1193
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 3 cut(s) 16, 554, 592
BclI TGATCA 1 cut(s) 597
BcoDI GTCTC 2 cut(s) 686, 875
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 4 cut(s) 144, 606, 947, 992
BfmI CTRYAG 2 cut(s) 680, 779
BfoI RGCGCY 1 cut(s) 953
BfrI CTTAAG 1 cut(s) 956
BfuAI ACCTGC 1 cut(s) 1196
BmcAI AGTACT 2 cut(s) 604, 613
Bme1390I CCNGG 3 cut(s) 16, 554, 592
BmeRI GACNNNNNGTC 1 cut(s) 829
BmgBI CACGTC 1 cut(s) 1100
BmrFI CCNGG 3 cut(s) 16, 554, 592
BmsI GCATC 1 cut(s) 1035
BmtI GCTAGC 1 cut(s) 995
BpiI GAAGAC 2 cut(s) 50, 1094
BpmI CTGGAG 3 cut(s) 671, 710, 950
BpuEI CTTGAG 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 1065
BsaI GGTCTC 1 cut(s) 875
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 1104, 1134
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 1112, 1191
Bse1I ACTGG 2 cut(s) 170, 933
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 3 cut(s) 16, 554, 592
BseGI GGATG 5 cut(s) 201, 331, 600, 1168, 1171
BseLI CCNNNNNNNGG 3 cut(s) 430, 1112, 1191
BseMII CTCAG 2 cut(s) 916, 923
BseNI ACTGG 2 cut(s) 170, 933
BseX3I CGGCCG 2 cut(s) 185, 221
BseXI GCAGC 7 cut(s) 411, 414, 627, 666, 672, 694, 721
Bsh1236I CGCG 1 cut(s) 634
Bsh1285I CGRYCG 2 cut(s) 188, 224
BshFI GGCC 3 cut(s) 187, 223, 590
BsiEI CGRYCG 2 cut(s) 188, 224
BsiSI CCGG 5 cut(s) 38, 188, 224, 335, 528
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 3 cut(s) 430, 1112, 1191
BsmAI GTCTC 2 cut(s) 686, 875
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 3 cut(s) 187, 223, 590
Bso31I GGTCTC 1 cut(s) 875
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 6 cut(s) 181, 190, 226, 597, 646, 784
BspACI CCGC 8 cut(s) 118, 121, 389, 542, 634, 719, 731, 1155
BspANI GGCC 3 cut(s) 187, 223, 590
BspCNI CTCAG 2 cut(s) 915, 922
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 1 cut(s) 634
BspMAI CTGCAG 1 cut(s) 684
BspMI ACCTGC 1 cut(s) 1196
BspOI GCTAGC 1 cut(s) 995
BspPI GGATC 5 cut(s) 189, 198, 234, 654, 792
BspQI GCTCTTC 1 cut(s) 728
BspTI CTTAAG 1 cut(s) 956
BspTNI GGTCTC 1 cut(s) 875
BsrBI CCGCTC 2 cut(s) 721, 1155
BsrI ACTGG 2 cut(s) 170, 933
BssMI GATC 6 cut(s) 181, 190, 226, 597, 646, 784
BssSI CACGAG 1 cut(s) 512
Bst2BI CACGAG 1 cut(s) 512
Bst2UI CCWGG 3 cut(s) 16, 554, 592
Bst4CI ACNGT 3 cut(s) 361, 376, 850
Bst6I CTCTTC 2 cut(s) 579, 728
BstAFI CTTAAG 1 cut(s) 956
BstAPI GCANNNNNTGC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 1065
BstC8I GCNNGC 2 cut(s) 993, 1203
BstDEI CTNAG 3 cut(s) 476, 902, 909
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 5 cut(s) 201, 331, 600, 1168, 1171
BstFNI CGCG 1 cut(s) 634
BstH2I RGCGCY 1 cut(s) 953
BstHHI GCGC 5 cut(s) 634, 679, 859, 952, 1097
BstKTI GATC 6 cut(s) 184, 193, 229, 600, 649, 787
BstMAI GTCTC 2 cut(s) 686, 875
BstMBI GATC 6 cut(s) 181, 190, 226, 597, 646, 784
BstMCI CGRYCG 2 cut(s) 188, 224
BstMWI GCNNNNNNNGC 5 cut(s) 129, 640, 685, 1092, 1164
BstNI CCWGG 3 cut(s) 16, 554, 592
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 3 cut(s) 14, 552, 590
BstSFI CTRYAG 2 cut(s) 680, 779
BstSNI TACGTA 1 cut(s) 1065
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 7 cut(s) 411, 414, 627, 666, 672, 694, 721
BstV2I GAAGAC 2 cut(s) 50, 1094
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BstZI CGGCCG 2 cut(s) 185, 221
BsuRI GGCC 3 cut(s) 187, 223, 590
BtrI CACGTC 1 cut(s) 1100
BtsCI GGATG 5 cut(s) 201, 331, 600, 1168, 1171
BtsIMutI CAGTG 3 cut(s) 366, 372, 747
BveI ACCTGC 1 cut(s) 1196
Cac8I GCNNGC 2 cut(s) 993, 1203
CaiI CAGNNNCTG 1 cut(s) 688
CfoI GCGC 5 cut(s) 634, 679, 859, 952, 1097
CsiI ACCWGGT 1 cut(s) 552
Csp6I GTAC 8 cut(s) 147, 163, 493, 550, 603, 612, 1062, 1066
CviAII CATG 3 cut(s) 129, 283, 1159
CviQI GTAC 8 cut(s) 147, 163, 493, 550, 603, 612, 1062, 1066
DdeI CTNAG 3 cut(s) 476, 902, 909
DpnI GATC 6 cut(s) 183, 192, 228, 599, 648, 786
DpnII GATC 6 cut(s) 181, 190, 226, 597, 646, 784
DraI TTTAAA 1 cut(s) 1027
DraIII CACNNNGTG 1 cut(s) 517
DriI GACNNNNNGTC 1 cut(s) 829
EaeI YGGCCR 2 cut(s) 185, 221
EagI CGGCCG 2 cut(s) 185, 221
Eam1104I CTCTTC 2 cut(s) 579, 728
Eam1105I GACNNNNNGTC 1 cut(s) 829
EarI CTCTTC 2 cut(s) 579, 728
EclXI CGGCCG 2 cut(s) 185, 221
Eco105I TACGTA 1 cut(s) 1065
Eco31I GGTCTC 1 cut(s) 875
Eco47III AGCGCT 1 cut(s) 951
Eco52I CGGCCG 2 cut(s) 185, 221
Eco57I CTGAAG 3 cut(s) 8, 332, 709
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 14, 552, 590
FaeI CATG 3 cut(s) 132, 286, 1162
FaqI GGGAC 1 cut(s) 383
FatI CATG 3 cut(s) 128, 282, 1158
FbaI TGATCA 1 cut(s) 597
FblI GTMKAC 1 cut(s) 108
FokI GGATG 5 cut(s) 208, 318, 607, 1158, 1175
FspAI RTGCGCAY 1 cut(s) 1096
FspBI CTAG 4 cut(s) 144, 606, 947, 992
FspI TGCGCA 2 cut(s) 858, 1096
GlaI GCGC 5 cut(s) 633, 678, 858, 951, 1096
GsuI CTGGAG 3 cut(s) 671, 710, 950
HaeII RGCGCY 1 cut(s) 953
HaeIII GGCC 3 cut(s) 187, 223, 590
HapII CCGG 5 cut(s) 38, 188, 224, 335, 528
HhaI GCGC 5 cut(s) 634, 679, 859, 952, 1097
Hin1II CATG 3 cut(s) 132, 286, 1162
Hin6I GCGC 5 cut(s) 632, 677, 857, 950, 1095
HinP1I GCGC 5 cut(s) 632, 677, 857, 950, 1095
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 266, 328, 662
HpaII CCGG 5 cut(s) 38, 188, 224, 335, 528
HphI GGTGA 4 cut(s) 374, 529, 568, 769
Hpy166II GTNNAC 3 cut(s) 109, 149, 364
Hpy188I TCNGA 8 cut(s) 27, 195, 231, 667, 905, 912, 1137, 1194
Hpy188III TCNNGA 7 cut(s) 325, 335, 581, 650, 659, 788, 1106
Hpy8I GTNNAC 3 cut(s) 109, 149, 364
Hpy99I CGWCG 1 cut(s) 1112
HpyAV CCTTC 2 cut(s) 307, 992
HpyCH4III ACNGT 3 cut(s) 361, 376, 850
HpyCH4IV ACGT 2 cut(s) 1064, 1099
HpyCH4V TGCA 3 cut(s) 253, 399, 682
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 640, 685, 1092, 1164
HpyF3I CTNAG 3 cut(s) 476, 902, 909
HpySE526I ACGT 2 cut(s) 1064, 1099
Hsp92II CATG 3 cut(s) 132, 286, 1162
HspAI GCGC 5 cut(s) 632, 677, 857, 950, 1095
Kpn2I TCCGGA 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 597
Kzo9I GATC 6 cut(s) 181, 190, 226, 597, 646, 784
LguI GCTCTTC 1 cut(s) 728
LmnI GCTCC 1 cut(s) 957
Lsp1109I GCAGC 7 cut(s) 411, 414, 627, 666, 672, 694, 721
LweI GCATC 1 cut(s) 1035
MabI ACCWGGT 1 cut(s) 552
MaeI CTAG 4 cut(s) 144, 606, 947, 992
MaeII ACGT 2 cut(s) 1064, 1099
MaeIII GTNAC 3 cut(s) 743, 924, 1123
MalI GATC 6 cut(s) 183, 192, 228, 599, 648, 786
MbiI CCGCTC 2 cut(s) 721, 1155
MboI GATC 6 cut(s) 181, 190, 226, 597, 646, 784
MflI RGATCY 1 cut(s) 646
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 9 cut(s) 57, 283, 434, 508, 580, 646, 784, 798, 1106
MroI TCCGGA 1 cut(s) 334
MseI TTAA 4 cut(s) 242, 957, 1026, 1230
MslI CAYNNNNRTG 1 cut(s) 819
MspA1I CMGCKG 1 cut(s) 685
MspCI CTTAAG 1 cut(s) 956
MspI CCGG 5 cut(s) 38, 188, 224, 335, 528
MspR9I CCNGG 3 cut(s) 16, 554, 592
MvaI CCWGG 3 cut(s) 16, 554, 592
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 5 cut(s) 129, 640, 685, 1092, 1164
NdeII GATC 6 cut(s) 181, 190, 226, 597, 646, 784
NheI GCTAGC 1 cut(s) 991
NlaIII CATG 3 cut(s) 132, 286, 1162
NmuCI GTSAC 2 cut(s) 743, 1123
NsbI TGCGCA 2 cut(s) 858, 1096
NspI RCATGY 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 728
PfeI GAWTC 3 cut(s) 266, 328, 662
Ppu21I YACGTR 1 cut(s) 1065
PshBI ATTAAT 1 cut(s) 1230
Psp6I CCWGG 3 cut(s) 14, 552, 590
PspGI CCWGG 3 cut(s) 14, 552, 590
PstI CTGCAG 1 cut(s) 684
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 685
RsaI GTAC 8 cut(s) 148, 164, 494, 551, 604, 613, 1063, 1067
RsaNI GTAC 8 cut(s) 147, 163, 493, 550, 603, 612, 1062, 1066
RseI CAYNNNNRTG 1 cut(s) 819
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 4 cut(s) 242, 957, 1026, 1230
Sau3AI GATC 6 cut(s) 181, 190, 226, 597, 646, 784
ScaI AGTACT 2 cut(s) 604, 613
ScrFI CCNGG 3 cut(s) 16, 554, 592
SexAI ACCWGGT 1 cut(s) 552
SfaNI GCATC 1 cut(s) 1035
SfcI CTRYAG 2 cut(s) 680, 779
SmiMI CAYNNNNRTG 1 cut(s) 819
SmlI CTYRAG 2 cut(s) 61, 956
SmoI CTYRAG 2 cut(s) 61, 956
SnaBI TACGTA 1 cut(s) 1065
SpeI ACTAGT 1 cut(s) 605
SsiI CCGC 8 cut(s) 118, 121, 389, 542, 634, 719, 731, 1155
SspMI CTAG 4 cut(s) 144, 606, 947, 992
StyD4I CCNGG 3 cut(s) 14, 552, 590
TaaI ACNGT 3 cut(s) 361, 376, 850
TaiI ACGT 2 cut(s) 1067, 1102
TaqI TCGA 3 cut(s) 324, 348, 426
TaqII GACCGA 1 cut(s) 731
TatI WGTACW 3 cut(s) 146, 602, 611
TauI GCSGC 5 cut(s) 123, 392, 545, 734, 1158
TfiI GAWTC 3 cut(s) 266, 328, 662
Tru1I TTAA 4 cut(s) 242, 957, 1026, 1230
Tru9I TTAA 4 cut(s) 242, 957, 1026, 1230
TscAI CASTG 3 cut(s) 366, 379, 754
TseFI GTSAC 2 cut(s) 743, 1123
TseI GCWGC 7 cut(s) 399, 402, 640, 679, 682, 685, 734
Tsp45I GTSAC 2 cut(s) 743, 1123
TspDTI ATGAA 6 cut(s) 212, 299, 366, 474, 830, 974
TspGWI ACGGA 4 cut(s) 194, 510, 712, 1125
TspRI CASTG 3 cut(s) 366, 379, 754
Vha464I CTTAAG 1 cut(s) 956
VspI ATTAAT 1 cut(s) 1230
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 4 cut(s) 67, 563, 1022, 1215
XceI RCATGY 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 4 cut(s) 144, 606, 947, 992
ZrmI AGTACT 2 cut(s) 604, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.