Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Reverse (-)

20819711 .. 20824284

Gene Structure 4574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56008

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGTGAATTTCTACTGGAGCATCTGGAGAAATCGATTTTCGATCTGCTCCGACGGTGAAGTTTCGGCTGGAACATCAGTCTTAATTGAGTTTGGATCTGCTCCGATGGTGAAGTTTCTGCTGGAGGATCTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCTGGAGTATACACCCGCCGCGGATGGGGTGTGTTCTGTGGCCCTCATCATGCTTGTAGCGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

87

Amino Acids

9.63

Weight (kDa)

6.25

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	216
AciI	CCGC	3 cut(s)	211, 214, 216
AclWI	GGATC	2 cut(s)	103, 135
AcsI	RAATTY	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	220
AlwI	GGATC	2 cut(s)	103, 135
AoxI	GGCC	2 cut(s)	171, 235
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	171, 236
AsuHPI	GGTGA	3 cut(s)	16, 68, 121
BccI	CCATC	2 cut(s)	100, 213
BceAI	ACGGC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	171, 236
BmsI	GCATC	1 cut(s)	30
BpmI	CTGGAG	5 cut(s)	37, 46, 143, 152, 219
Bsa29I	ATCGAT	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	178
BseCI	ATCGAT	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	173, 237
BshVI	ATCGAT	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	220
BsnI	GGCC	2 cut(s)	173, 237
Bsp143I	GATC	3 cut(s)	42, 95, 127
BspACI	CCGC	3 cut(s)	211, 214, 216
BspANI	GGCC	2 cut(s)	173, 237
BspDI	ATCGAT	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	216
BspPI	GGATC	2 cut(s)	103, 135
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	3 cut(s)	42, 95, 127
BssNAI	GTATAC	1 cut(s)	205
Bst1107I	GTATAC	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	3 cut(s)	45, 98, 130
BstMBI	GATC	3 cut(s)	42, 95, 127
BstUI	CGCG	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	95, 127
BstYI	RGATCY	2 cut(s)	95, 127
BstZ17I	GTATAC	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	173, 237
BsuTUI	ATCGAT	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	171, 236
Cfr42I	CCGCGG	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	34
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	3 cut(s)	68, 173, 237
CviKI_1	RGCY	3 cut(s)	68, 173, 237
DpnI	GATC	3 cut(s)	44, 97, 129
DpnII	GATC	3 cut(s)	42, 95, 127
FaeI	CATG	1 cut(s)	248
FaiI	YATR	2 cut(s)	205, 246
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	5 cut(s)	37, 46, 143, 152, 219
HaeIII	GGCC	2 cut(s)	173, 237
Hin1II	CATG	1 cut(s)	248
HphI	GGTGA	3 cut(s)	16, 68, 121
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	52, 105
Hpy188III	TCNNGA	2 cut(s)	25, 131
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	248
KspI	CCGCGG	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	42, 95, 127
LmnI	GCTCC	3 cut(s)	18, 53, 106
LpnPI	CCDG	7 cut(s)	10, 54, 107, 116, 126, 154, 183
LweI	GCATC	1 cut(s)	30
MalI	GATC	3 cut(s)	44, 97, 129
MboI	GATC	3 cut(s)	42, 95, 127
MboII	GAAGA	2 cut(s)	199, 202
MflI	RGATCY	2 cut(s)	95, 127
MluCI	AATT	2 cut(s)	7, 84
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	3 cut(s)	118, 249, 250
MseI	TTAA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	216
NdeII	GATC	3 cut(s)	42, 95, 127
NlaIII	CATG	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	171, 236
PsuI	RGATCY	2 cut(s)	95, 127
SacII	CCGCGG	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	42, 95, 127
Sau96I	GGNCC	2 cut(s)	171, 236
SetI	ASST	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	30
Sfr303I	CCGCGG	1 cut(s)	217
SgrBI	CCGCGG	1 cut(s)	217
Sse9I	AATT	2 cut(s)	7, 84
SsiI	CCGC	3 cut(s)	211, 214, 216
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	34, 41
TasI	AATT	2 cut(s)	7, 84
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	167
XapI	RAATTY	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.