RchiOBHm_Chr1g0338001

Mitochondrial inner membrane protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000640
Physical Location & Seq
Reverse (-)
29963758 .. 29964314
557 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56585

Sequence Viewer

Length: 204 bp
ATGGTGAAGTTTATGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCTGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCGCGGATGGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAGTGA

Protein Analysis

67

Amino Acids

7.65

Weight (kDa)

8.62

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 106, 109, 111
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 161
AoxI GGCC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 16, 152
BalI TGGCCA 1 cut(s) 129
BccI CCATC 2 cut(s) 108, 138
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 38, 47
BsaJI CCNNGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 129
BspACI CCGC 3 cut(s) 106, 109, 111
BspANI GGCC 1 cut(s) 129
BspFNI CGCG 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 109
BssNAI GTATAC 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 111
BstUI CGCG 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 137
BstZ17I GTATAC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 127
Cfr42I CCGCGG 1 cut(s) 112
CviJI RGCY 2 cut(s) 68, 129
CviKI_1 RGCY 2 cut(s) 68, 129
DdeI CTNAG 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 127
FaiI YATR 2 cut(s) 14, 100
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 2 cut(s) 38, 47
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 93
HinfI GANTC 2 cut(s) 118, 182
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 16, 152
Hpy166II GTNNAC 3 cut(s) 100, 155, 196
Hpy188III TCNNGA 2 cut(s) 26, 186
Hpy8I GTNNAC 3 cut(s) 100, 155, 196
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 157
KspI CCGCGG 1 cut(s) 112
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 6 cut(s) 2, 11, 21, 49, 106, 111
LweI GCATC 1 cut(s) 31
MaeII ACGT 1 cut(s) 157
MboII GAAGA 3 cut(s) 94, 97, 191
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 2 cut(s) 161, 189
MluNI TGGCCA 1 cut(s) 129
Mox20I TGGCCA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 111
PfeI GAWTC 2 cut(s) 118, 182
PkrI GCNGC 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 135
SacII CCGCGG 1 cut(s) 112
SatI GCNGC 1 cut(s) 109
SetI ASST 1 cut(s) 160
SfaNI GCATC 1 cut(s) 31
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 2 cut(s) 161, 189
SsiI CCGC 3 cut(s) 106, 109, 111
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 185
TasI AATT 2 cut(s) 161, 189
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 118, 182
TscAI CASTG 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 1 cut(s) 155
XapI RAATTY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.