Rroxscaffold_7G00217460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000640
Physical Location & Seq
Forward (+)
67932563 .. 67945198
12636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217460.1

Sequence Viewer

Length: 909 bp
ATGGCGTTTGAGGTGTACGTACGTGCCGGTAATCTGCTTCACATGCAATTAGAGCGGATGATGGAGGCTGTACATACTAGGGAGTCTCAACTAGGTTTAGCACTAGCCCCCGAGCCCCATCGGTACTCTCGTGTACTACGCCATGAGCACGGATCAAATCTTCTACCCCATCGGGTATCGACGCCAAGCTCGCTCCACCCCATCGGGTACCGGAGGCTCAACATCTTCTACCCCATCGGGTATCGACGCCAAGCTCCCTCCACCCCATCGGGGTACCGGAGGCTAACATCTTCTACCCCATCGGGTATCGACGCCAAGCCCCCTCCACCCCATCGGGTACGGAGGCTAACATCTTCTACCCCATCGGGTATCGACGCCAAGCTCCCTCCACCCCATCGGGTACCGGAGGCTAACATCTTCTACCCCATCGGGTATCTACGCCAAGCTCCCTCCACCCCATCGGGGTACGGGAGGCTAACATCTTCTACCCCATCGGCATCTACGCCAAGCTCCCTCCACCCCATCGGGTACCGGGAGGCTAACATCTTCTACCCCATCGGGCTCAAATTTCTCCATCCCACCAATCCCGGGCAACCTCATTGTCCCACGAAAGTGGCTTACCTACGGCGTAGTCCGCTCAAGATTTCTCTTCCGAGGGCACTTGGGGGACTACCTATAGGCACACTAGTGCCAAACCTCGAGACCAAAATAAATAAGTCTCCACCCAAGAAACATCTTGAACGGGAACTTGGGGGACTTGTACATACTAGGGAGTCTCAACTAGGTTTAGCACTAGCCCCCGAGCCCCATCGGTACTCCCGTGTACTACGCCACGGGCTCGGTTCACAACCCACCATGGCGGCGTCACATAAGATACCACCCCGGCACCCGTGGCCCGGGCAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

33.47

Weight (kDa)

10.84

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 4 cut(s) 207, 273, 400, 528
AccB1I GGYRCC 5 cut(s) 207, 273, 400, 528, 885
AccBSI CCGCTC 2 cut(s) 55, 637
AciI CCGC 3 cut(s) 55, 635, 860
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 566
AcyI GRCGYC 5 cut(s) 182, 247, 312, 375, 863
AfiI CCNNNNNNNGG 4 cut(s) 270, 462, 588, 896
AgsI TTSAA 1 cut(s) 740
AhlI ACTAGT 1 cut(s) 685
AjuI GAANNNNNNNTTGG 2 cut(s) 732, 764
AleI CACNNNNGTG 2 cut(s) 611, 686
AluBI AGCT 6 cut(s) 189, 254, 382, 446, 510, 906
AluI AGCT 6 cut(s) 189, 254, 382, 446, 510, 906
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 4 cut(s) 90, 695, 723, 780
AlwI GGATC 1 cut(s) 160
Ama87I CYCGRG 5 cut(s) 110, 587, 698, 800, 896
AoxI GGCC 1 cut(s) 893
ApoI RAATTY 1 cut(s) 566
Asp718I GGTACC 4 cut(s) 207, 273, 400, 528
AspS9I GGNCC 1 cut(s) 894
AsuC2I CCSGG 6 cut(s) 533, 588, 589, 883, 897, 898
AvaI CYCGRG 5 cut(s) 110, 587, 698, 800, 896
BaeGI GKGCMC 1 cut(s) 661
BaeI ACNNNNGTAYC 4 cut(s) 115, 148, 805, 838
BanI GGYRCC 5 cut(s) 207, 273, 400, 528, 885
BanII GRGCYC 4 cut(s) 117, 564, 807, 840
BauI CACGAG 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 150
BceAI ACGGC 1 cut(s) 641
BcnI CCSGG 6 cut(s) 533, 588, 589, 883, 897, 898
BcoDI GTCTC 4 cut(s) 90, 695, 723, 780
BcuI ACTAGT 1 cut(s) 685
BfaI CTAG 8 cut(s) 78, 92, 104, 686, 768, 782, 794, 907
BfmI CTRYAG 1 cut(s) 675
BisI GCNGC 1 cut(s) 861
BlsI GCNGC 1 cut(s) 862
Bme1390I CCNGG 6 cut(s) 533, 588, 589, 883, 897, 898
BmeT110I CYCGRG 5 cut(s) 110, 587, 698, 800, 896
BmgT120I GGNCC 1 cut(s) 894
BmiI GGNNCC 5 cut(s) 209, 275, 402, 530, 887
BmrFI CCNGG 6 cut(s) 533, 588, 589, 883, 897, 898
BmsI GCATC 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 6 cut(s) 533, 588, 589, 883, 897, 898
BsaAI YACGTR 2 cut(s) 19, 23
BsaHI GRCGYC 5 cut(s) 182, 247, 312, 375, 863
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 7 cut(s) 587, 653, 832, 855, 881, 890, 896
BsaWI WCCGGW 3 cut(s) 210, 276, 403
Bsc4I CCNNNNNNNGG 4 cut(s) 270, 462, 588, 896
Bse118I RCCGGY 1 cut(s) 26
BseDI CCNNGG 7 cut(s) 587, 653, 832, 855, 881, 890, 896
BseGI GGATG 2 cut(s) 63, 574
BseLI CCNNNNNNNGG 4 cut(s) 270, 462, 588, 896
BseSI GKGCMC 1 cut(s) 661
BshFI GGCC 1 cut(s) 895
BshNI GGYRCC 5 cut(s) 207, 273, 400, 528, 885
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 5 cut(s) 110, 587, 698, 800, 896
BsiSI CCGG 8 cut(s) 27, 211, 277, 404, 532, 588, 883, 897
BsiWI CGTACG 1 cut(s) 19
BslFI GGGAC 3 cut(s) 588, 681, 768
BslI CCNNNNNNNGG 4 cut(s) 270, 462, 588, 896
BsmAI GTCTC 4 cut(s) 90, 695, 723, 780
BsmFI GGGAC 3 cut(s) 588, 681, 768
BsnI GGCC 1 cut(s) 895
Bso31I GGTCTC 1 cut(s) 695
BsoBI CYCGRG 5 cut(s) 110, 587, 698, 800, 896
Bsp1286I GDGCHC 6 cut(s) 117, 150, 564, 661, 807, 840
Bsp1407I TGTACA 2 cut(s) 70, 760
Bsp143I GATC 1 cut(s) 152
Bsp19I CCATGG 1 cut(s) 855
BspACI CCGC 3 cut(s) 55, 635, 860
BspANI GGCC 1 cut(s) 895
BspLI GGNNCC 5 cut(s) 209, 275, 402, 530, 887
BspPI GGATC 1 cut(s) 160
BspT107I GGYRCC 5 cut(s) 207, 273, 400, 528, 885
BspTNI GGTCTC 1 cut(s) 695
BsrBI CCGCTC 2 cut(s) 55, 637
BsrFI RCCGGY 1 cut(s) 26
BsrGI TGTACA 2 cut(s) 70, 760
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 7 cut(s) 587, 653, 832, 855, 881, 890, 896
BssMI GATC 1 cut(s) 152
BssNI GRCGYC 5 cut(s) 182, 247, 312, 375, 863
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 855
Bst2BI CACGAG 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 654
BstACI GRCGYC 5 cut(s) 182, 247, 312, 375, 863
BstAUI TGTACA 2 cut(s) 70, 760
BstBAI YACGTR 2 cut(s) 19, 23
BstC8I GCNNGC 1 cut(s) 191
BstDSI CCRYGG 3 cut(s) 832, 855, 890
BstF5I GGATG 2 cut(s) 63, 574
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 4 cut(s) 90, 695, 723, 780
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 5 cut(s) 43, 52, 190, 634, 892
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 6 cut(s) 531, 586, 587, 881, 895, 896
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 661
BstSNI TACGTA 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 613
BsuRI GGCC 1 cut(s) 895
BtgI CCRYGG 3 cut(s) 832, 855, 890
BtsCI GGATG 2 cut(s) 63, 574
Cac8I GCNNGC 1 cut(s) 191
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 894
Cfr9I CCCGGG 2 cut(s) 587, 896
CseI GACGC 5 cut(s) 190, 255, 320, 383, 852
CviAII CATG 3 cut(s) 43, 143, 856
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco105I TACGTA 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 855
Eco24I GRGCYC 4 cut(s) 117, 564, 807, 840
Eco31I GGTCTC 1 cut(s) 695
Eco88I CYCGRG 5 cut(s) 110, 587, 698, 800, 896
EcoT14I CCWWGG 1 cut(s) 855
EcoT38I GRGCYC 4 cut(s) 117, 564, 807, 840
ErhI CCWWGG 1 cut(s) 855
FaeI CATG 3 cut(s) 46, 146, 859
FaiI YATR 7 cut(s) 44, 75, 144, 677, 765, 857, 870
FaqI GGGAC 3 cut(s) 588, 681, 768
FatI CATG 3 cut(s) 42, 142, 855
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 2 cut(s) 70, 561
FriOI GRGCYC 4 cut(s) 117, 564, 807, 840
Fsp4HI GCNGC 1 cut(s) 861
FspBI CTAG 8 cut(s) 78, 92, 104, 686, 768, 782, 794, 907
GluI GCNGC 1 cut(s) 861
HaeIII GGCC 1 cut(s) 895
HapII CCGG 8 cut(s) 27, 211, 277, 404, 532, 588, 883, 897
HgaI GACGC 5 cut(s) 190, 255, 320, 383, 852
Hin1I GRCGYC 5 cut(s) 182, 247, 312, 375, 863
Hin1II CATG 3 cut(s) 46, 146, 859
HinfI GANTC 2 cut(s) 83, 773
HpaII CCGG 8 cut(s) 27, 211, 277, 404, 532, 588, 883, 897
Hpy166II GTNNAC 4 cut(s) 16, 134, 824, 845
Hpy188I TCNGA 1 cut(s) 654
Hpy188III TCNNGA 3 cut(s) 640, 700, 737
Hpy8I GTNNAC 4 cut(s) 16, 134, 824, 845
Hpy99I CGWCG 4 cut(s) 184, 249, 314, 377
HpyCH4IV ACGT 2 cut(s) 18, 22
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 52, 190, 634, 892
HpySE526I ACGT 2 cut(s) 18, 22
Hsp92I GRCGYC 5 cut(s) 182, 247, 312, 375, 863
Hsp92II CATG 3 cut(s) 46, 146, 859
KpnI GGTACC 4 cut(s) 211, 277, 404, 532
Kzo9I GATC 1 cut(s) 152
LmnI GCTCC 5 cut(s) 198, 259, 387, 451, 515
LpnPI CCDG 7 cut(s) 40, 224, 290, 417, 545, 601, 896
LweI GCATC 1 cut(s) 506
MaeI CTAG 8 cut(s) 78, 92, 104, 686, 768, 782, 794, 907
MaeII ACGT 2 cut(s) 18, 22
MaeIII GTNAC 1 cut(s) 864
MalI GATC 1 cut(s) 154
MbiI CCGCTC 2 cut(s) 55, 637
MboI GATC 1 cut(s) 152
MboII GAAGA 8 cut(s) 152, 217, 282, 345, 409, 474, 538, 641
MhlI GDGCHC 6 cut(s) 117, 150, 564, 661, 807, 840
MluCI AATT 2 cut(s) 47, 566
MlyI GAGTC 2 cut(s) 92, 782
MslI CAYNNNNRTG 2 cut(s) 611, 686
MspI CCGG 8 cut(s) 27, 211, 277, 404, 532, 588, 883, 897
MspR9I CCNGG 6 cut(s) 533, 588, 589, 883, 897, 898
MwoI GCNNNNNNNGC 5 cut(s) 43, 52, 190, 634, 892
NciI CCSGG 6 cut(s) 533, 588, 589, 883, 897, 898
NcoI CCATGG 1 cut(s) 855
NdeII GATC 1 cut(s) 152
NlaIII CATG 3 cut(s) 46, 146, 859
NlaIV GGNNCC 5 cut(s) 209, 275, 402, 530, 887
NmuCI GTSAC 1 cut(s) 864
NspI RCATGY 1 cut(s) 46
OliI CACNNNNGTG 2 cut(s) 611, 686
PaeR7I CTCGAG 1 cut(s) 698
PcsI WCGNNNNNNNCGW 2 cut(s) 127, 817
Pfl23II CGTACG 1 cut(s) 19
PkrI GCNGC 1 cut(s) 862
PleI GAGTC 2 cut(s) 91, 781
PpsI GAGTC 2 cut(s) 91, 781
Ppu21I YACGTR 2 cut(s) 19, 23
PspLI CGTACG 1 cut(s) 19
PspN4I GGNNCC 5 cut(s) 209, 275, 402, 530, 887
PspPI GGNCC 1 cut(s) 894
RseI CAYNNNNRTG 2 cut(s) 611, 686
SatI GCNGC 1 cut(s) 861
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 1 cut(s) 894
SchI GAGTC 2 cut(s) 92, 782
ScrFI CCNGG 6 cut(s) 533, 588, 589, 883, 897, 898
SduI GDGCHC 6 cut(s) 117, 150, 564, 661, 807, 840
SfaNI GCATC 1 cut(s) 506
SfcI CTRYAG 1 cut(s) 675
Sfr274I CTCGAG 1 cut(s) 698
SlaI CTCGAG 1 cut(s) 698
SmaI CCCGGG 2 cut(s) 589, 898
SmiMI CAYNNNNRTG 2 cut(s) 611, 686
SmlI CTYRAG 2 cut(s) 638, 698
SmoI CTYRAG 2 cut(s) 638, 698
SnaBI TACGTA 1 cut(s) 19
SpeI ACTAGT 1 cut(s) 685
SrfI GCCCGGGC 1 cut(s) 898
Sse9I AATT 2 cut(s) 47, 566
SsiI CCGC 3 cut(s) 55, 635, 860
SspMI CTAG 8 cut(s) 78, 92, 104, 686, 768, 782, 794, 907
StyD4I CCNGG 6 cut(s) 531, 586, 587, 881, 895, 896
StyI CCWWGG 1 cut(s) 855
TaiI ACGT 2 cut(s) 21, 25
TaqI TCGA 5 cut(s) 179, 244, 309, 372, 699
TasI AATT 2 cut(s) 47, 566
TatI WGTACW 4 cut(s) 70, 133, 760, 823
TauI GCSGC 1 cut(s) 863
TseFI GTSAC 1 cut(s) 864
Tsp45I GTSAC 1 cut(s) 864
TspGWI ACGGA 2 cut(s) 165, 355
TspMI CCCGGG 2 cut(s) 587, 896
XapI RAATTY 1 cut(s) 566
XceI RCATGY 1 cut(s) 46
XhoI CTCGAG 1 cut(s) 698
XmaI CCCGGG 2 cut(s) 587, 896
XspI CTAG 8 cut(s) 78, 92, 104, 686, 768, 782, 794, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.