Rroxscaffold_3G00225890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000640
Physical Location & Seq
Reverse (-)
9244831 .. 9256632
11802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225890.1

Sequence Viewer

Length: 1377 bp
ATGACGATTGAGGAGGTACAGTGTAGTGGGCGGTTGTCGCAGATAATCGATAGTGGTCACGGGCAATCGAAGGTGGTCGTGGGCAATCAAAGGTGGTCGCTGGTGATAAGAGAAGGGGTTGGCGGTGGAGCGATCAAGATGGTGGGTGGTGATCGAAGAGTGGAAGAGATCAATCTTGGACGTCACCACATGAATGGATTTTATCTCCACTTTGCATTTTGTCCAAGCTCGCTCACCCCATCGGGCACCGGAGGATCAAATCTTCTACCCTATCGAGTATCGAAGCCAATCTCCCTCCACCCCATTGGGTACCGGAGGCTAACATCTTCTACCCCATCGGTATCGACGCCAAGCTCGCTCCACCCCATCGGGCACGGAGGATCAAATCTTCTACCCCATCGGTATCGAAGCCAAGCTCGCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGCATCGAAGCCAATCTCCCTCCACCCCATTGGGTACCGGAGGCTCATATCTTCTACCCCATTGGGTATCGAGGCCAATCTCCCTCCACCCCATCGGGTACCGGAGGCTAACATCTTCTACCCCATCGGCTATCGACGCCAAGCTCGCTCCACCCCATCGGGCACCGAGGATCAAATCTTCTACCCCATCGGGTATCGAAGCCAATCTCCCTCCACCCTATCGGGTATCGGAGGCTCACATCTTCTACCCCATCGGCATCGAAGCCAATCTCCCTCCACCCCATCAAGTACCGGAGGCTAACATCTTCTACCCCATCGGGTATCGAAGTCAATCTCCTTCCACCCCATCGGGGCACCGGAGGATCAAATCTTCTACCCCATCGGCATCGAAGCCAATCTCCTCCACCCCATCGGGTATCGAAGTCAATCTCCCTCCACCCCATTGGGCACCGGAGGATCAAATCTTCTACCCCATCGGTATCGAAGCCAATCTCCCTCCACCCCATTGGGTACCGGAGGCTAACATCTTCTACCCCATCGGGTATCGACGCCAAGCTCGCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGAAGCCAAGCTCCCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGTATCGAAGCCAATCTCTCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATTGGGTATCGGAGCCAATCTCTCTCCACCCCATTGGGTACCGGAGGCTCAAAATTCTCCATCCCACCAATCCCGGGGCAACCTCATTGTCCCACGAAAGTGGCTTACCTACGGCGTAGCCCGCTCAAGATTTCTCTTCGAGGGCACTTGGGGGACTACCTATAGGCACACTAGTGCCAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

458

Amino Acids

49.79

Weight (kDa)

10.7

Isoelectric Point (pI)

64.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 184
Acc65I GGTACC 9 cut(s) 309, 434, 497, 561, 973, 1037, 1101, 1164, 1228
AccBSI CCGCTC 1 cut(s) 1314
AciI CCGC 3 cut(s) 31, 123, 1312
AclWI GGATC 5 cut(s) 262, 388, 641, 833, 927
AcsI RAATTY 1 cut(s) 1243
AcyI GRCGYC 4 cut(s) 181, 347, 600, 1012
AfiI CCNNNNNNNGG 2 cut(s) 813, 1264
AhlI ACTAGT 1 cut(s) 1361
AleI CACNNNNGTG 2 cut(s) 1288, 1362
AluBI AGCT 6 cut(s) 228, 354, 416, 607, 1019, 1083
AluI AGCT 6 cut(s) 228, 354, 416, 607, 1019, 1083
AlwI GGATC 5 cut(s) 262, 388, 641, 833, 927
Ama87I CYCGRG 1 cut(s) 1263
AoxI GGCC 1 cut(s) 536
ApoI RAATTY 1 cut(s) 1243
Asp718I GGTACC 9 cut(s) 309, 434, 497, 561, 973, 1037, 1101, 1164, 1228
AsuC2I CCSGG 2 cut(s) 1264, 1265
AsuHPI GGTGA 4 cut(s) 115, 161, 176, 226
AvaI CYCGRG 1 cut(s) 1263
BaeGI GKGCMC 6 cut(s) 248, 375, 628, 819, 913, 1337
BceAI ACGGC 1 cut(s) 1318
BcnI CCSGG 2 cut(s) 1264, 1265
BcuI ACTAGT 1 cut(s) 1361
BfaI CTAG 1 cut(s) 1362
BfmI CTRYAG 1 cut(s) 1351
Bme1390I CCNGG 2 cut(s) 1264, 1265
BmeT110I CYCGRG 1 cut(s) 1263
BmrFI CCNGG 2 cut(s) 1264, 1265
BmsI GCATC 3 cut(s) 475, 729, 857
BplI GAGNNNNNCTC 2 cut(s) 1194, 1226
BpuEI CTTGAG 1 cut(s) 1300
BpuMI CCSGG 2 cut(s) 1264, 1265
Bsa29I ATCGAT 1 cut(s) 48
BsaHI GRCGYC 4 cut(s) 181, 347, 600, 1012
BsaJI CCNNGG 3 cut(s) 629, 1263, 1264
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 813, 1264
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 629, 1263, 1264
BseGI GGATG 1 cut(s) 1250
BseLI CCNNNNNNNGG 2 cut(s) 813, 1264
BseRI GAGGAG 2 cut(s) 26, 853
BseSI GKGCMC 6 cut(s) 248, 375, 628, 819, 913, 1337
BshFI GGCC 1 cut(s) 538
BshVI ATCGAT 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 1263
BslFI GGGAC 2 cut(s) 1265, 1357
BslI CCNNNNNNNGG 2 cut(s) 813, 1264
BsmFI GGGAC 2 cut(s) 1265, 1357
BsnI GGCC 1 cut(s) 538
BsoBI CYCGRG 1 cut(s) 1263
Bsp1286I GDGCHC 6 cut(s) 248, 375, 628, 819, 913, 1337
Bsp143I GATC 8 cut(s) 132, 151, 168, 254, 380, 633, 825, 919
BspACI CCGC 3 cut(s) 31, 123, 1312
BspANI GGCC 1 cut(s) 538
BspDI ATCGAT 1 cut(s) 48
BspPI GGATC 5 cut(s) 262, 388, 641, 833, 927
BsrBI CCGCTC 1 cut(s) 1314
BssECI CCNNGG 3 cut(s) 629, 1263, 1264
BssMI GATC 8 cut(s) 132, 151, 168, 254, 380, 633, 825, 919
BssNI GRCGYC 4 cut(s) 181, 347, 600, 1012
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 3 cut(s) 151, 159, 1331
BstACI GRCGYC 4 cut(s) 181, 347, 600, 1012
BstC8I GCNNGC 6 cut(s) 230, 356, 418, 609, 1021, 1312
BstF5I GGATG 1 cut(s) 1250
BstKTI GATC 8 cut(s) 135, 154, 171, 257, 383, 636, 828, 922
BstMBI GATC 8 cut(s) 132, 151, 168, 254, 380, 633, 825, 919
BstMWI GCNNNNNNNGC 7 cut(s) 37, 355, 417, 599, 608, 1020, 1311
BstSCI CCNGG 2 cut(s) 1262, 1263
BstSFI CTRYAG 1 cut(s) 1351
BstSLI GKGCMC 6 cut(s) 248, 375, 628, 819, 913, 1337
BstXI CCANNNNNNTGG 8 cut(s) 194, 305, 493, 906, 969, 1033, 1224, 1290
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 1 cut(s) 538
BsuTUI ATCGAT 1 cut(s) 48
BtsCI GGATG 1 cut(s) 1250
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 6 cut(s) 230, 356, 418, 609, 1021, 1312
Cfr9I CCCGGG 1 cut(s) 1263
ClaI ATCGAT 1 cut(s) 48
CseI GACGC 3 cut(s) 355, 608, 1020
CviAII CATG 1 cut(s) 190
DpnI GATC 8 cut(s) 134, 153, 170, 256, 382, 635, 827, 921
DpnII GATC 8 cut(s) 132, 151, 168, 254, 380, 633, 825, 919
Eam1104I CTCTTC 3 cut(s) 151, 159, 1331
EarI CTCTTC 3 cut(s) 151, 159, 1331
Eco88I CYCGRG 1 cut(s) 1263
FaeI CATG 1 cut(s) 193
FaiI YATR 3 cut(s) 191, 511, 1353
FaqI GGGAC 2 cut(s) 1265, 1357
FatI CATG 1 cut(s) 189
FauI CCCGC 1 cut(s) 1319
FokI GGATG 1 cut(s) 1237
FspBI CTAG 1 cut(s) 1362
HaeIII GGCC 1 cut(s) 538
HgaI GACGC 3 cut(s) 355, 608, 1020
Hin1I GRCGYC 4 cut(s) 181, 347, 600, 1012
Hin1II CATG 1 cut(s) 193
HphI GGTGA 4 cut(s) 115, 161, 176, 226
Hpy188I TCNGA 2 cut(s) 694, 1202
Hpy188III TCNNGA 2 cut(s) 136, 1317
Hpy99I CGWCG 3 cut(s) 349, 602, 1014
HpyAV CCTTC 3 cut(s) 64, 107, 810
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 355, 417, 599, 608, 1020, 1311
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 4 cut(s) 181, 347, 600, 1012
Hsp92II CATG 1 cut(s) 193
KpnI GGTACC 9 cut(s) 313, 438, 501, 565, 977, 1041, 1105, 1168, 1232
Kzo9I GATC 8 cut(s) 132, 151, 168, 254, 380, 633, 825, 919
LmnI GCTCC 7 cut(s) 128, 363, 425, 616, 1028, 1088, 1202
LweI GCATC 3 cut(s) 475, 729, 857
MaeI CTAG 1 cut(s) 1362
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 2 cut(s) 56, 182
MalI GATC 8 cut(s) 134, 153, 170, 256, 382, 635, 827, 921
MbiI CCGCTC 1 cut(s) 1314
MboI GATC 8 cut(s) 132, 151, 168, 254, 380, 633, 825, 919
MhlI GDGCHC 6 cut(s) 248, 375, 628, 819, 913, 1337
MluCI AATT 1 cut(s) 1243
MslI CAYNNNNRTG 3 cut(s) 192, 1288, 1362
MspR9I CCNGG 2 cut(s) 1264, 1265
MwoI GCNNNNNNNGC 7 cut(s) 37, 355, 417, 599, 608, 1020, 1311
NciI CCSGG 2 cut(s) 1264, 1265
NdeII GATC 8 cut(s) 132, 151, 168, 254, 380, 633, 825, 919
NlaIII CATG 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 56, 182
OliI CACNNNNGTG 2 cut(s) 1288, 1362
RseI CAYNNNNRTG 3 cut(s) 192, 1288, 1362
Sau3AI GATC 8 cut(s) 132, 151, 168, 254, 380, 633, 825, 919
ScrFI CCNGG 2 cut(s) 1264, 1265
SduI GDGCHC 6 cut(s) 248, 375, 628, 819, 913, 1337
SfaNI GCATC 3 cut(s) 475, 729, 857
SfcI CTRYAG 1 cut(s) 1351
SmaI CCCGGG 1 cut(s) 1265
SmiMI CAYNNNNRTG 3 cut(s) 192, 1288, 1362
SmlI CTYRAG 1 cut(s) 1315
SmoI CTYRAG 1 cut(s) 1315
SpeI ACTAGT 1 cut(s) 1361
Sse9I AATT 1 cut(s) 1243
SsiI CCGC 3 cut(s) 31, 123, 1312
SspMI CTAG 1 cut(s) 1362
StyD4I CCNGG 2 cut(s) 1262, 1263
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 184
TasI AATT 1 cut(s) 1243
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 2 cut(s) 56, 182
Tsp45I GTSAC 2 cut(s) 56, 182
TspDTI ATGAA 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 390
TspMI CCCGGG 1 cut(s) 1263
TspRI CASTG 1 cut(s) 26
XapI RAATTY 1 cut(s) 1243
XmaI CCCGGG 1 cut(s) 1263
XspI CTAG 1 cut(s) 1362
ZraI GACGTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.