Rroxscaffold_5G00387630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000640
Physical Location & Seq
Reverse (-)
66207780 .. 66242738
34959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00387630.1

Sequence Viewer

Length: 717 bp
ATGTTGGCGAGTAAGATGGAGTGGAGGGCGAGATCGGGTAGAGGAGCGGGACACGTAGTGCCGAGGGCCGGACTTAGCCTCTGTATTTTTCATTTTGGCGATAACGATAGGTCTTTTCTCGTAAATGCTTTGGAATTTGTTGAAACAATTGATCGAGTGGTCCGACTTTTGGAATGCCCGCTTGCGCACGGCAACGCAAGGGTTCGCGAGGGACAGCACCGTGCCGTGTCGAGGCCATATCCTTTTGTGGCTTTACTTGTTACATCAAAGAGAAGATTACAAGCACAAGAGGGAGTACAAGAAGGAGTTCTTAATTCAAGGTGCTTCAAGGTGGAGGAAACACACACAAGGAGAGATCAAGGAGAGGAACTTTGGTGGTTCACTTGGATCGGATTAAAATCACGCTCCAAGGGAGTAGTTCGTAACATTGAATTATCATCCATTGATCTCTTTCGGCCAGTCCGGATTGGATTGATGCGGTTTGCCATTCACACACATATCATCTCACAACGTTTTGACAACCGAGTCCACTTCACCTTTGTCTTCACCAGTTCTGTAGAGCAGCGAGGACGAAAGCTCACCCCTACAACAAGTATGGATGCAGTACTATGCACTTGGGACGGGACGATAGCGGACAAAGGCGGGTGTGCAGAACAAGTTCGTTTGACCATCGGCTCGAAGAGGAGAGGGGTACCTGCAAAAACCCTCGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.97

Weight (kDa)

10.3

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
Acc16I TGCGCA 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 703
Acc65I GGTACC 1 cut(s) 691
AccB1I GGYRCC 1 cut(s) 691
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 462
AciI CCGC 5 cut(s) 47, 179, 478, 632, 642
AclI AACGTT 1 cut(s) 511
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 455
AcsI RAATTY 1 cut(s) 134
AdeI CACNNNGTG 1 cut(s) 58
AfaI GTAC 3 cut(s) 297, 606, 693
AfiI CCNNNNNNNGG 3 cut(s) 68, 169, 231
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 4 cut(s) 143, 318, 328, 431
AluBI AGCT 1 cut(s) 577
AluI AGCT 1 cut(s) 577
AlwI GGATC 1 cut(s) 395
Aor13HI TCCGGA 1 cut(s) 462
AoxI GGCC 3 cut(s) 66, 233, 455
ApeKI GCWGC 1 cut(s) 562
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 2 cut(s) 306, 657
Asp718I GGTACC 1 cut(s) 691
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 66, 160
AsuHPI GGTGA 3 cut(s) 526, 538, 571
AvaII GGWCC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 691
BbsI GAAGAC 1 cut(s) 535
BbvI GCAGC 1 cut(s) 574
BccI CCATC 2 cut(s) 10, 677
BceAI ACGGC 2 cut(s) 205, 209
BfmI CTRYAG 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 1 cut(s) 563
BlsI GCNGC 1 cut(s) 564
BmcAI AGTACT 1 cut(s) 606
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 66, 160
BmiI GGNNCC 1 cut(s) 693
BmsI GCATC 3 cut(s) 465, 589, 700
BpiI GAAGAC 1 cut(s) 535
BsaAI YACGTR 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 62, 408
BsaWI WCCGGW 1 cut(s) 462
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 169, 231
Bse1I ACTGG 2 cut(s) 458, 549
Bse8I GATNNNNATC 1 cut(s) 397
BseAI TCCGGA 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 62, 408
BseGI GGATG 2 cut(s) 437, 604
BseJI GATNNNNATC 1 cut(s) 397
BseLI CCNNNNNNNGG 3 cut(s) 68, 169, 231
BseNI ACTGG 2 cut(s) 458, 549
BseRI GAGGAG 2 cut(s) 57, 697
BseXI GCAGC 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 669
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 68, 235, 457
BshNI GGYRCC 1 cut(s) 691
BsiSI CCGG 2 cut(s) 69, 463
BslFI GGGAC 4 cut(s) 63, 225, 632, 637
BslI CCNNNNNNNGG 3 cut(s) 68, 169, 231
BsmFI GGGAC 4 cut(s) 63, 225, 632, 637
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 3 cut(s) 68, 235, 457
Bsp13I TCCGGA 1 cut(s) 462
Bsp143I GATC 5 cut(s) 32, 151, 355, 387, 445
Bsp68I TCGCGA 1 cut(s) 207
BspACI CCGC 5 cut(s) 47, 179, 478, 632, 642
BspANI GGCC 3 cut(s) 68, 235, 457
BspEI TCCGGA 1 cut(s) 462
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 693
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 691
BsrBI CCGCTC 1 cut(s) 47
BsrI ACTGG 2 cut(s) 458, 549
BssECI CCNNGG 2 cut(s) 62, 408
BssMI GATC 5 cut(s) 32, 151, 355, 387, 445
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 674
BstBAI YACGTR 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 179, 183
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 437, 604
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 5 cut(s) 35, 154, 358, 390, 448
BstMBI GATC 5 cut(s) 32, 151, 355, 387, 445
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 574
BstV2I GAAGAC 1 cut(s) 535
BsuRI GGCC 3 cut(s) 68, 235, 457
BtsCI GGATG 2 cut(s) 437, 604
BtuMI TCGCGA 1 cut(s) 207
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 2 cut(s) 179, 183
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 66, 160
Csp6I GTAC 3 cut(s) 296, 605, 692
CviJI RGCY 7 cut(s) 68, 78, 235, 251, 457, 577, 675
CviKI_1 RGCY 7 cut(s) 68, 78, 235, 251, 457, 577, 675
CviQI GTAC 3 cut(s) 296, 605, 692
DdeI CTNAG 1 cut(s) 74
DpnI GATC 5 cut(s) 34, 153, 357, 389, 447
DpnII GATC 5 cut(s) 32, 151, 355, 387, 445
DraIII CACNNNGTG 1 cut(s) 58
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
EaeI YGGCCR 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaiI YATR 4 cut(s) 238, 498, 596, 610
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 4 cut(s) 63, 225, 632, 637
FauI CCCGC 3 cut(s) 40, 186, 635
Fnu4HI GCNGC 1 cut(s) 563
FokI GGATG 2 cut(s) 424, 611
Fsp4HI GCNGC 1 cut(s) 563
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 563
HaeIII GGCC 3 cut(s) 68, 235, 457
HapII CCGG 2 cut(s) 69, 463
HhaI GCGC 1 cut(s) 187
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 1 cut(s) 525
HpaII CCGG 2 cut(s) 69, 463
HphI GGTGA 3 cut(s) 526, 538, 571
Hpy166II GTNNAC 2 cut(s) 381, 529
Hpy188I TCNGA 2 cut(s) 164, 392
Hpy188III TCNNGA 2 cut(s) 206, 463
Hpy8I GTNNAC 2 cut(s) 381, 529
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 2 cut(s) 54, 511
HpyCH4V TGCA 4 cut(s) 602, 612, 650, 698
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 2 cut(s) 54, 511
HspAI GCGC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 462
KpnI GGTACC 1 cut(s) 695
Kzo9I GATC 5 cut(s) 32, 151, 355, 387, 445
LmnI GCTCC 2 cut(s) 44, 410
LpnPI CCDG 5 cut(s) 82, 471, 476, 562, 708
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 3 cut(s) 465, 589, 700
MaeII ACGT 2 cut(s) 54, 511
MaeIII GTNAC 2 cut(s) 259, 422
MalI GATC 5 cut(s) 34, 153, 357, 389, 447
MbiI CCGCTC 1 cut(s) 47
MboI GATC 5 cut(s) 32, 151, 355, 387, 445
MboII GAAGA 3 cut(s) 285, 535, 691
MfeI CAATTG 1 cut(s) 147
MluCI AATT 4 cut(s) 134, 147, 313, 431
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 1 cut(s) 187
MroI TCCGGA 1 cut(s) 462
MroXI GAANNNNTTC 2 cut(s) 306, 657
MseI TTAA 2 cut(s) 312, 395
MspI CCGG 2 cut(s) 69, 463
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 179
MvnI CGCG 1 cut(s) 207
NdeII GATC 5 cut(s) 32, 151, 355, 387, 445
NlaIV GGNNCC 1 cut(s) 693
NmeAIII GCCGAG 1 cut(s) 87
NruI TCGCGA 1 cut(s) 207
NsbI TGCGCA 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PctI GAATGC 1 cut(s) 179
PdmI GAANNNNTTC 2 cut(s) 306, 657
PkrI GCNGC 1 cut(s) 564
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
Ppu21I YACGTR 1 cut(s) 55
Psp1406I AACGTT 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 693
PspPI GGNCC 2 cut(s) 66, 160
RruI TCGCGA 1 cut(s) 207
RsaI GTAC 3 cut(s) 297, 606, 693
RsaNI GTAC 3 cut(s) 296, 605, 692
SaqAI TTAA 2 cut(s) 312, 395
SatI GCNGC 1 cut(s) 563
Sau3AI GATC 5 cut(s) 32, 151, 355, 387, 445
Sau96I GGNCC 2 cut(s) 66, 160
ScaI AGTACT 1 cut(s) 606
SchI GAGTC 1 cut(s) 534
SetI ASST 8 cut(s) 57, 113, 323, 333, 514, 539, 579, 697
SfaNI GCATC 3 cut(s) 465, 589, 700
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 160
Sse9I AATT 4 cut(s) 134, 147, 313, 431
SsiI CCGC 5 cut(s) 47, 179, 478, 632, 642
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 2 cut(s) 57, 514
TaqI TCGA 4 cut(s) 154, 230, 677, 708
TasI AATT 4 cut(s) 134, 147, 313, 431
TatI WGTACW 2 cut(s) 295, 604
Tru1I TTAA 2 cut(s) 312, 395
Tru9I TTAA 2 cut(s) 312, 395
TseI GCWGC 1 cut(s) 562
TspDTI ATGAA 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 134
XmnI GAANNNNTTC 2 cut(s) 306, 657
ZrmI AGTACT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.