Rh3AG000900

Mitochondrial inner membrane protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000640
Physical Location & Seq
Forward (+)
99065 .. 102272
3208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG000900.1

Sequence Viewer

Length: 438 bp
ATGGTGAAGTTTCTGTTGGAGCATTTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCATTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCGCAGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCTCCAATGGTGAATTGGGCTAATTGCCCTCATCATGCTTGTAGCGAGATTCGTGCTAGCCATCTTAGTGGTGATTGCCACTGTAAGCGTGAATTTTTGCTGTGCCAAGAAGATTTGAGAATTGTGAACAAGCTCAGTTCATTGATCAAGACCCTTTGCAGCAGCAAGTGCAATTTTCATTCATCGATCAAATTTGCAGCACCAAGTGCAATTTTCAGTTCAGGCTAG

Protein Analysis

145

Amino Acids

16.36

Weight (kDa)

8.0

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M76 PF09768 1 - 104 2.2e-31 Peptidase M76 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AciI CCGC 2 cut(s) 106, 109
AcsI RAATTY 2 cut(s) 302, 401
AdeI CACNNNGTG 1 cut(s) 416
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 2 cut(s) 181, 343
AluI AGCT 2 cut(s) 181, 343
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 209, 369, 372, 407
ApoI RAATTY 2 cut(s) 302, 401
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 3 cut(s) 16, 232, 293
AsuNHI GCTAGC 1 cut(s) 266
BbvI GCAGC 4 cut(s) 196, 381, 384, 419
BccI CCATC 2 cut(s) 108, 279
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BclI TGATCA 1 cut(s) 354
BfaI CTAG 2 cut(s) 267, 436
BisI GCNGC 5 cut(s) 109, 210, 370, 373, 408
BlsI GCNGC 5 cut(s) 110, 211, 371, 374, 409
BmgT120I GGNCC 1 cut(s) 66
BmtI GCTAGC 1 cut(s) 270
Bsa29I ATCGAT 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 395
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 358
BseXI GCAGC 4 cut(s) 196, 381, 384, 419
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 395
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 354, 396
BspACI CCGC 2 cut(s) 106, 109
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 357
BspDI ATCGAT 1 cut(s) 395
BspOI GCTAGC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 73
BssMI GATC 2 cut(s) 354, 396
BssNAI GTATAC 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 293
BstAPI GCANNNNNTGC 2 cut(s) 378, 416
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 275, 344
BstKTI GATC 2 cut(s) 357, 399
BstMBI GATC 2 cut(s) 354, 396
BstMWI GCNNNNNNNGC 2 cut(s) 378, 416
BstNSI RCATGY 1 cut(s) 148
BstV1I GCAGC 4 cut(s) 196, 381, 384, 419
BstXI CCANNNNNNTGG 1 cut(s) 278
BstZ17I GTATAC 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 395
BsuRI GGCC 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 395
CviAII CATG 5 cut(s) 139, 145, 176, 188, 245
CviJI RGCY 7 cut(s) 68, 181, 209, 230, 270, 343, 435
CviKI_1 RGCY 7 cut(s) 68, 181, 209, 230, 270, 343, 435
DdeI CTNAG 2 cut(s) 275, 344
DpnI GATC 2 cut(s) 356, 398
DpnII GATC 2 cut(s) 354, 396
DraIII CACNNNGTG 1 cut(s) 416
FaeI CATG 5 cut(s) 142, 148, 179, 191, 248
FaiI YATR 6 cut(s) 100, 140, 146, 177, 189, 246
FatI CATG 5 cut(s) 138, 144, 175, 187, 244
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 1 cut(s) 354
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 5 cut(s) 109, 210, 370, 373, 408
Fsp4HI GCNGC 5 cut(s) 109, 210, 370, 373, 408
FspBI CTAG 2 cut(s) 267, 436
GluI GCNGC 5 cut(s) 109, 210, 370, 373, 408
GsaI CCCAGC 1 cut(s) 67
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 93
Hin1II CATG 5 cut(s) 142, 148, 179, 191, 248
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 259
HpaII CCGG 1 cut(s) 93
HphI GGTGA 3 cut(s) 16, 232, 293
Hpy166II GTNNAC 3 cut(s) 100, 160, 337
Hpy188III TCNNGA 1 cut(s) 358
Hpy8I GTNNAC 3 cut(s) 100, 160, 337
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 5 cut(s) 148, 369, 381, 407, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 416
HpyF3I CTNAG 2 cut(s) 275, 344
Hsp92II CATG 5 cut(s) 142, 148, 179, 191, 248
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 2 cut(s) 354, 396
LmnI GCTCC 2 cut(s) 19, 217
LpnPI CCDG 4 cut(s) 21, 49, 106, 417
Lsp1109I GCAGC 4 cut(s) 196, 381, 384, 419
MaeI CTAG 2 cut(s) 267, 436
MalI GATC 2 cut(s) 356, 398
MboI GATC 2 cut(s) 354, 396
MboII GAAGA 3 cut(s) 94, 97, 332
MluCI AATT 8 cut(s) 183, 223, 232, 302, 330, 382, 401, 420
MnlI CCTC 2 cut(s) 148, 249
MslI CAYNNNNRTG 2 cut(s) 143, 276
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 378, 416
NdeII GATC 2 cut(s) 354, 396
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 5 cut(s) 142, 148, 179, 191, 248
NspI RCATGY 1 cut(s) 148
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 5 cut(s) 110, 211, 371, 374, 409
PspFI CCCAGC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 66
RseI CAYNNNNRTG 2 cut(s) 143, 276
SatI GCNGC 5 cut(s) 109, 210, 370, 373, 408
Sau3AI GATC 2 cut(s) 354, 396
Sau96I GGNCC 1 cut(s) 66
SetI ASST 3 cut(s) 159, 183, 345
SmiMI CAYNNNNRTG 2 cut(s) 143, 276
Sse9I AATT 8 cut(s) 183, 223, 232, 302, 330, 382, 401, 420
SsiI CCGC 2 cut(s) 106, 109
SspMI CTAG 2 cut(s) 267, 436
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 1 cut(s) 395
TasI AATT 8 cut(s) 183, 223, 232, 302, 330, 382, 401, 420
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 259
TscAI CASTG 1 cut(s) 296
TseI GCWGC 4 cut(s) 209, 369, 372, 407
TspDTI ATGAA 6 cut(s) 62, 155, 176, 339, 377, 381
TspRI CASTG 1 cut(s) 296
XapI RAATTY 2 cut(s) 302, 401
XceI RCATGY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 2 cut(s) 267, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.