Rroxscaffold_5G00335820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000640
Physical Location & Seq
Reverse (-)
3290248 .. 3291401
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335820.1

Sequence Viewer

Length: 291 bp
ATGGGGAGGATCGGCCGTGCATCGCCGAAAAGTGGTTTTCCGCCGGATCGGGTTTTCATTTCGGGGGAGGGCTTCGATCCAAACATGGGGCAGCAGCGCGTGCAAAGGGAGGACCATAGGGCAGCATGGGGTGGCTTGGTCCGAGCTCAGGAGGGCCGGTCGCCGCGGGAGGTGGCCGGAGGAAGAATTCACGGCCGGCCATCATTCAAATGTGCAGAGGCTCTATGCTTGGGAAAAGAAACTATACCAGAGGTCAAGGATGGAGAGACAATAAAGATAGATCGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.48

Weight (kDa)

9.58

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 99, 166
AciI CCGC 3 cut(s) 41, 164, 166
AclWI GGATC 3 cut(s) 17, 54, 71
AcoI YGGCCR 4 cut(s) 13, 174, 193, 197
AcsI RAATTY 1 cut(s) 186
AfiI CCNNNNNNNGG 3 cut(s) 32, 86, 148
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 3 cut(s) 17, 54, 71
AoxI GGCC 5 cut(s) 13, 154, 174, 193, 197
ApeKI GCWGC 3 cut(s) 91, 94, 122
ApoI RAATTY 1 cut(s) 186
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 3 cut(s) 112, 139, 154
AvaII GGWCC 2 cut(s) 112, 139
BanII GRGCYC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 103, 106, 134
BccI CCATC 2 cut(s) 208, 254
BceAI ACGGC 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 260
BisI GCNGC 4 cut(s) 92, 95, 123, 164
BlsI GCNGC 4 cut(s) 93, 96, 124, 165
Bme18I GGWCC 2 cut(s) 112, 139
BmgT120I GGNCC 3 cut(s) 112, 139, 154
BmsI GCATC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 86, 148
Bse118I RCCGGY 2 cut(s) 156, 195
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 32, 86, 148
BseMII CTCAG 1 cut(s) 161
BseX3I CGGCCG 2 cut(s) 13, 193
BseXI GCAGC 3 cut(s) 103, 106, 134
BsgI GTGCAG 1 cut(s) 234
Bsh1236I CGCG 2 cut(s) 99, 166
Bsh1285I CGRYCG 3 cut(s) 16, 161, 196
BshFI GGCC 5 cut(s) 15, 156, 176, 195, 199
BsiEI CGRYCG 3 cut(s) 16, 161, 196
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 4 cut(s) 44, 157, 177, 196
BslI CCNNNNNNNGG 3 cut(s) 32, 86, 148
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 5 cut(s) 15, 156, 176, 195, 199
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 4 cut(s) 9, 46, 76, 280
BspACI CCGC 3 cut(s) 41, 164, 166
BspANI GGCC 5 cut(s) 15, 156, 176, 195, 199
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 2 cut(s) 99, 166
BspPI GGATC 3 cut(s) 17, 54, 71
BsrFI RCCGGY 2 cut(s) 156, 195
BssAI RCCGGY 2 cut(s) 156, 195
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 4 cut(s) 9, 46, 76, 280
BstAPI GCANNNNNTGC 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 101, 197
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 2 cut(s) 99, 166
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 12, 49, 79, 283
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 4 cut(s) 9, 46, 76, 280
BstMCI CGRYCG 3 cut(s) 16, 161, 196
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstUI CGCG 2 cut(s) 99, 166
BstV1I GCAGC 3 cut(s) 103, 106, 134
BstZI CGGCCG 2 cut(s) 13, 193
BsuRI GGCC 5 cut(s) 15, 156, 176, 195, 199
BtgI CCRYGG 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 101, 197
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 2 cut(s) 156, 195
Cfr13I GGNCC 3 cut(s) 112, 139, 154
Cfr42I CCGCGG 1 cut(s) 167
CviAII CATG 3 cut(s) 85, 126, 288
CviJI RGCY 9 cut(s) 15, 72, 135, 146, 156, 176, 195, 199, 221
CviKI_1 RGCY 9 cut(s) 15, 72, 135, 146, 156, 176, 195, 199, 221
DdeI CTNAG 1 cut(s) 147
DpnI GATC 4 cut(s) 11, 48, 78, 282
DpnII GATC 4 cut(s) 9, 46, 76, 280
EaeI YGGCCR 4 cut(s) 13, 174, 193, 197
EagI CGGCCG 2 cut(s) 13, 193
EciI GGCGGA 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 146
EclXI CGGCCG 2 cut(s) 13, 193
Eco24I GRGCYC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 112, 139
Eco52I CGGCCG 2 cut(s) 13, 193
Eco53kI GAGCTC 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 3 cut(s) 88, 129, 291
FaiI YATR 6 cut(s) 86, 117, 127, 226, 245, 289
FatI CATG 3 cut(s) 84, 125, 287
FauI CCCGC 1 cut(s) 159
Fnu4HI GCNGC 4 cut(s) 92, 95, 123, 164
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 148
FseI GGCCGGCC 1 cut(s) 199
Fsp4HI GCNGC 4 cut(s) 92, 95, 123, 164
GlaI GCGC 1 cut(s) 98
GluI GCNGC 4 cut(s) 92, 95, 123, 164
HaeIII GGCC 5 cut(s) 15, 156, 176, 195, 199
HapII CCGG 4 cut(s) 44, 157, 177, 196
HhaI GCGC 1 cut(s) 99
Hin1II CATG 3 cut(s) 88, 129, 291
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HpaII CCGG 4 cut(s) 44, 157, 177, 196
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 20, 103, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 88, 129, 291
HspAI GCGC 1 cut(s) 97
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
KspI CCGCGG 1 cut(s) 167
Kzo9I GATC 4 cut(s) 9, 46, 76, 280
LpnPI CCDG 6 cut(s) 57, 134, 170, 190, 209, 261
Lsp1109I GCAGC 3 cut(s) 103, 106, 134
LweI GCATC 1 cut(s) 29
MalI GATC 4 cut(s) 11, 48, 78, 282
MboI GATC 4 cut(s) 9, 46, 76, 280
MboII GAAGA 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 1 cut(s) 186
MnlI CCTC 7 cut(s) 61, 103, 145, 163, 173, 211, 244
MroNI GCCGGC 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 208
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 4 cut(s) 44, 157, 177, 196
MvnI CGCG 2 cut(s) 99, 166
MwoI GCNNNNNNNGC 1 cut(s) 100
NaeI GCCGGC 1 cut(s) 197
NdeII GATC 4 cut(s) 9, 46, 76, 280
NgoMIV GCCGGC 1 cut(s) 195
NlaIII CATG 3 cut(s) 88, 129, 291
PdiI GCCGGC 1 cut(s) 197
PkrI GCNGC 4 cut(s) 93, 96, 124, 165
Psp124BI GAGCTC 1 cut(s) 148
PspPI GGNCC 3 cut(s) 112, 139, 154
RigI GGCCGGCC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 208
SacI GAGCTC 1 cut(s) 148
SacII CCGCGG 1 cut(s) 167
SatI GCNGC 4 cut(s) 92, 95, 123, 164
Sau3AI GATC 4 cut(s) 9, 46, 76, 280
Sau96I GGNCC 3 cut(s) 112, 139, 154
SduI GDGCHC 1 cut(s) 148
SetI ASST 3 cut(s) 148, 174, 255
SfaNI GCATC 1 cut(s) 29
Sfr303I CCGCGG 1 cut(s) 167
SgrBI CCGCGG 1 cut(s) 167
SinI GGWCC 2 cut(s) 112, 139
SmiMI CAYNNNNRTG 1 cut(s) 208
Sse9I AATT 1 cut(s) 186
SsiI CCGC 3 cut(s) 41, 164, 166
SstI GAGCTC 1 cut(s) 148
TaqI TCGA 2 cut(s) 75, 283
TasI AATT 1 cut(s) 186
TauI GCSGC 1 cut(s) 166
TseI GCWGC 3 cut(s) 91, 94, 122
TspDTI ATGAA 1 cut(s) 46
VpaK11BI GGWCC 2 cut(s) 112, 139
XapI RAATTY 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.