Rroxscaffold_5G00348110

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
20015051 .. 20025322
10272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348110.1

Sequence Viewer

Length: 1212 bp
ATGGCATCGAAGAACTCGTGTCCCACATCGAGGATCGGGGAGAATCCCTTCCCACGCTTGAATATAAAGATCATAGCACAACCACCTTTAAGAGCCAAGCTCCCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGAAGCCAAGCTCTCCACCTCATTGGGTACCGGAGACTCACATCTTCTACCCCATCGGGTATCGAAGCCAAGCTCCCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTATCCCATCGGCATCGAAGCCAAGCTCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGCATCGGAGCCAAGCTCGTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGCATCGGAGCCAAGCTCTCTCCACCCCATTGGGTACGGAGGATCAAATCCTCTACCCCATCGGGTATCGAAGCCAAGCTCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGCATCGAAGCCAATCTCTCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGGAGCCAAGCTCTCTCCACCCCATTGGGTACGGGAGGATCAAATCCTCTACCCCATCGGTATCGAAGCCAAGCTCTCCACCCCATCGGGTACCGGAGGCTCACAGCTTCTACCCCATCGGGTATCGAAGCCAATCTCTCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGAAGCCAATCTCTCTCCACCCCATTGGGTACGGAGGCTCACGCCTTCTACCCCATCGGGTATCGAAGCCAATCTCTCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGCATCGAAGCCAATCTCTCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCTCATCGGGTATCGGAGCCAATCTCTCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGGAGCCAAGCTCTCTCCACCTCATTGGGTACCGGAGGCTCAAAATTCTACATCCCACCAATCCCGGGGGCAACCTCATTGTCCCACGAAAGTGGCTTACCTACAGCCGTAGCCCGCTCAAGATTTCTCTTCGAGGGCACTTGGGGGACTACCTATGGGCACACTAGTGCCAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

43.44

Weight (kDa)

11.09

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1149
AciI CCGC 1 cut(s) 1147
AclWI GGATC 3 cut(s) 41, 446, 635
AcsI RAATTY 1 cut(s) 1076
AfiI CCNNNNNNNGG 2 cut(s) 30, 1097
AgsI TTSAA 1 cut(s) 61
AhlI ACTAGT 1 cut(s) 1196
AleI CACNNNNGTG 2 cut(s) 1122, 1197
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 3 cut(s) 41, 446, 635
Ama87I CYCGRG 1 cut(s) 1096
ApoI RAATTY 1 cut(s) 1076
Asp700I GAANNNNTTC 1 cut(s) 47
AsuC2I CCSGG 2 cut(s) 1097, 1098
AvaI CYCGRG 1 cut(s) 1096
BaeGI GKGCMC 2 cut(s) 1172, 1194
BauI CACGAG 1 cut(s) 16
BceAI ACGGC 1 cut(s) 1124
BcnI CCSGG 2 cut(s) 1097, 1098
BcoDI GTCTC 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 1196
BfaI CTAG 1 cut(s) 1197
BfmI CTRYAG 1 cut(s) 1134
Bme1390I CCNGG 2 cut(s) 1097, 1098
BmeT110I CYCGRG 1 cut(s) 1096
BmrFI CCNGG 2 cut(s) 1097, 1098
BmsI GCATC 6 cut(s) 14, 285, 346, 408, 532, 911
BpuEI CTTGAG 1 cut(s) 1135
BpuMI CCSGG 2 cut(s) 1097, 1098
BsaJI CCNNGG 2 cut(s) 1096, 1097
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 1097
BseDI CCNNGG 2 cut(s) 1096, 1097
BseGI GGATG 1 cut(s) 1083
BseLI CCNNNNNNNGG 2 cut(s) 30, 1097
BseSI GKGCMC 2 cut(s) 1172, 1194
BsiHKCI CYCGRG 1 cut(s) 1096
BslFI GGGAC 3 cut(s) 6, 1099, 1192
BslI CCNNNNNNNGG 2 cut(s) 30, 1097
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 3 cut(s) 6, 1099, 1192
BsoBI CYCGRG 1 cut(s) 1096
Bsp1286I GDGCHC 2 cut(s) 1172, 1194
Bsp143I GATC 4 cut(s) 33, 69, 438, 627
BspACI CCGC 1 cut(s) 1147
BspPI GGATC 3 cut(s) 41, 446, 635
BsrBI CCGCTC 1 cut(s) 1149
BssECI CCNNGG 2 cut(s) 1096, 1097
BssMI GATC 4 cut(s) 33, 69, 438, 627
BssSI CACGAG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 1166
BstC8I GCNNGC 1 cut(s) 1147
BstF5I GGATG 1 cut(s) 1083
BstKTI GATC 4 cut(s) 36, 72, 441, 630
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 4 cut(s) 33, 69, 438, 627
BstSCI CCNGG 2 cut(s) 1095, 1096
BstSFI CTRYAG 1 cut(s) 1134
BstSLI GKGCMC 2 cut(s) 1172, 1194
BtsCI GGATG 1 cut(s) 1083
Cac8I GCNNGC 1 cut(s) 1147
Cfr9I CCCGGG 1 cut(s) 1096
DpnI GATC 4 cut(s) 35, 71, 440, 629
DpnII GATC 4 cut(s) 33, 69, 438, 627
Eam1104I CTCTTC 1 cut(s) 1166
EarI CTCTTC 1 cut(s) 1166
Eco88I CYCGRG 1 cut(s) 1096
FaiI YATR 3 cut(s) 65, 74, 1188
FaqI GGGAC 3 cut(s) 6, 1099, 1192
FauI CCCGC 1 cut(s) 1154
FokI GGATG 1 cut(s) 1070
FspBI CTAG 1 cut(s) 1197
HinfI GANTC 2 cut(s) 43, 189
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 5 cut(s) 342, 404, 592, 971, 1035
Hpy188III TCNNGA 1 cut(s) 1152
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 2 cut(s) 58, 833
Kzo9I GATC 4 cut(s) 33, 69, 438, 627
LmnI GCTCC 7 cut(s) 105, 231, 342, 404, 592, 971, 1035
LweI GCATC 6 cut(s) 14, 285, 346, 408, 532, 911
MaeI CTAG 1 cut(s) 1197
MalI GATC 4 cut(s) 35, 71, 440, 629
MbiI CCGCTC 1 cut(s) 1149
MboI GATC 4 cut(s) 33, 69, 438, 627
MhlI GDGCHC 2 cut(s) 1172, 1194
MluCI AATT 1 cut(s) 1076
MlyI GAGTC 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 2 cut(s) 1122, 1197
MspR9I CCNGG 2 cut(s) 1097, 1098
NciI CCSGG 2 cut(s) 1097, 1098
NdeII GATC 4 cut(s) 33, 69, 438, 627
OliI CACNNNNGTG 2 cut(s) 1122, 1197
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 43
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 1122, 1197
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 4 cut(s) 33, 69, 438, 627
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 2 cut(s) 1097, 1098
SduI GDGCHC 2 cut(s) 1172, 1194
SfaNI GCATC 6 cut(s) 14, 285, 346, 408, 532, 911
SfcI CTRYAG 1 cut(s) 1134
SmaI CCCGGG 1 cut(s) 1098
SmiMI CAYNNNNRTG 2 cut(s) 1122, 1197
SmlI CTYRAG 1 cut(s) 1150
SmoI CTYRAG 1 cut(s) 1150
SpeI ACTAGT 1 cut(s) 1196
Sse9I AATT 1 cut(s) 1076
SsiI CCGC 1 cut(s) 1147
SspMI CTAG 1 cut(s) 1197
StyD4I CCNGG 2 cut(s) 1095, 1096
TasI AATT 1 cut(s) 1076
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TspGWI ACGGA 2 cut(s) 448, 825
TspMI CCCGGG 1 cut(s) 1096
XapI RAATTY 1 cut(s) 1076
XmaI CCCGGG 1 cut(s) 1096
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.