Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Reverse (-)

63078576 .. 63080481

Gene Structure 1906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG467500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTGAAGTTTCTGCTGGAGCATTTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCAGCCGCGGAGGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCTCCGATGGTGAACTGGGCTAATTGCCCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

109

Amino Acids

12.24

Weight (kDa)

6.28

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 98	3.9e-26	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	109, 111
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	287
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AoxI	GGCC	2 cut(s)	66, 253
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	16, 217, 278
BalI	TGGCCA	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	196, 264
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BisI	GCNGC	2 cut(s)	109, 195
BlsI	GCNGC	2 cut(s)	110, 196
BmgT120I	GGNCC	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	68, 255
BsiSI	CCGG	1 cut(s)	93
BsnI	GGCC	2 cut(s)	68, 255
BspACI	CCGC	2 cut(s)	109, 111
BspANI	GGCC	2 cut(s)	68, 255
BspFNI	CGCG	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	109
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	260
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	133
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	68, 255
BtgI	CCRYGG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	66
Cfr42I	CCGCGG	1 cut(s)	112
CviAII	CATG	5 cut(s)	124, 130, 161, 173, 230
CviJI	RGCY	6 cut(s)	68, 108, 166, 194, 215, 255
CviKI_1	RGCY	6 cut(s)	68, 108, 166, 194, 215, 255
DdeI	CTNAG	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	253
FaeI	CATG	5 cut(s)	127, 133, 164, 176, 233
FaiI	YATR	6 cut(s)	100, 125, 131, 162, 174, 231
FatI	CATG	5 cut(s)	123, 129, 160, 172, 229
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	109, 195
Fsp4HI	GCNGC	2 cut(s)	109, 195
GluI	GCNGC	2 cut(s)	109, 195
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	68, 255
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	5 cut(s)	127, 133, 164, 176, 233
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	244, 308
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	16, 217, 278
Hpy166II	GTNNAC	5 cut(s)	100, 145, 208, 281, 322
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	1 cut(s)	312
Hpy8I	GTNNAC	5 cut(s)	100, 145, 208, 281, 322
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	5 cut(s)	127, 133, 164, 176, 233
KspI	CCGCGG	1 cut(s)	112
LmnI	GCTCC	2 cut(s)	19, 202
LpnPI	CCDG	7 cut(s)	2, 21, 49, 106, 118, 196, 237
Lsp1109I	GCAGC	1 cut(s)	181
MaeII	ACGT	1 cut(s)	283
MboII	GAAGA	3 cut(s)	94, 97, 317
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	4 cut(s)	168, 217, 287, 315
MluNI	TGGCCA	1 cut(s)	255
MnlI	CCTC	3 cut(s)	107, 133, 234
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MslI	CAYNNNNRTG	2 cut(s)	128, 261
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	111
NlaIII	CATG	5 cut(s)	127, 133, 164, 176, 233
NspI	RCATGY	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	244, 308
PkrI	GCNGC	2 cut(s)	110, 196
PspFI	CCCAGC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	128, 261
SacII	CCGCGG	1 cut(s)	112
SatI	GCNGC	2 cut(s)	109, 195
Sau96I	GGNCC	1 cut(s)	66
SetI	ASST	4 cut(s)	118, 144, 168, 286
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	128, 261
Sse9I	AATT	4 cut(s)	168, 217, 287, 315
SsiI	CCGC	2 cut(s)	109, 111
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	311
TasI	AATT	4 cut(s)	168, 217, 287, 315
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	244, 308
TscAI	CASTG	1 cut(s)	281
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	62, 140, 161
TspRI	CASTG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.