Rroxscaffold_5G00346800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000640
Physical Location & Seq
Forward (+)
17814749 .. 17834115
19367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346800.1

Sequence Viewer

Length: 1266 bp
ATGGAAAGAATGAATCTTAGTGAAGAGAAGAAGAAGGAAGGAAAGAGAGCAGCCCAAAGGCTGCCCCTGTTTTCTGCTGTGGTTCGCTACCGTTCGTTCTGTGCGGCGCTGGAGAGGCCATATCCTTTTGTGGCTTTACTTGTTAATGCAAAGAGAAGATTACAAGCACAAGGAGTACAAGAAGGAGTTCTTAATCCAAGGTGCTTCAAGGTGGAGGAGACACACACAAGGAGAGATCAAGTAGAGCAACTTTGGTGGTTCACTTGGATCGGATTAAAATCACGCTCCAAGGCCCGGCTCTCCACCCCATCGGTACCGAGAGACTCACATCTTCTACCCCATCGGGTATCGAAGCCAAGCTCTCCACCCCATTGGGTGCCGGAGGCTCACATCTTCTACCCCGTCGGGTATCGGAGCCAAGCTCTCTCCACCCCATTGGGTGCCGGAGACTCACATCTTCTACCCCATCGGGTATCGAAGCCCGCCGAAGCCCGGCTCTCCACCCCGTTGGGTGCGGGAGGCTCACATATTCTACCCCATCGGGTATCGAAGCCAAGCTCTCCACCCCATTGGGTACCGGAGCCTCACATCTTCTACCCCATCGGGTATCGAAGCCAAGCTCTCCACCCCATCGGGTGCCGGAGCCTCACATCTTCTACCCCATCGGGTATCGAAGCCAAGCTCTCCACCCCATTGGGTACGGGAGACTCACATCTTCTACGCCATTTGGTATCGAAGCCCGACTCTCCACCCCATTGGGTACCGGAGACTTACATCTTCTACCCCATCGGGTATCGAAGCCAAGCTCTCCACCCCATTGGGTGCCGGAGGCTCACATCTTCTACCCCATCGGGTATCGGAGCCAAGCTCTCTCCACCCCATTGGGTACGGCGGCTCATATCTTCTAACCCATCGGGTTTCGGAGCCAAGCTCTCTCCACCTCATTGGGTACCGGAGGCTCAAAAATTCTCCATTCCACCAATCCCGGGGCACCCTCATTGTCCACGAAAGTGGCTTACCTACGGCGTAGCTGCTCAAGATTTCTCTTCGAGGGCACTTGGGGGACTACCTATAGGCACACTAGTGCCAAACCTTAAGACCAAAATAATAAGTCCCCACCCAAGAAACATCTTGAACTGGAACTTGGGGGACTTGTACATACTAGGAGTCTCAACTAGGTTTAGCACTAGCCCCGAGCCCCGTCGGTACTCCCGGGTACTACGCCATGGGCCTGGTCCACAAACCACCATGGCGGGCGTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

421

Amino Acids

46.76

Weight (kDa)

10.53

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 4 cut(s) 313, 574, 760, 949
AccB1I GGYRCC 9 cut(s) 313, 376, 440, 574, 636, 760, 822, 949, 990
AciI CCGC 5 cut(s) 104, 483, 515, 892, 1253
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 965
AcyI GRCGYC 1 cut(s) 1257
AfiI CCNNNNNNNGG 3 cut(s) 294, 492, 986
AflII CTTAAG 1 cut(s) 1094
AgsI TTSAA 2 cut(s) 208, 1135
AhlI ACTAGT 1 cut(s) 1081
AjnI CCWGG 1 cut(s) 1231
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
AleI CACNNNNGTG 2 cut(s) 1009, 1082
AluBI AGCT 9 cut(s) 360, 422, 558, 620, 682, 806, 868, 931, 1031
AluI AGCT 9 cut(s) 360, 422, 558, 620, 682, 806, 868, 931, 1031
Alw26I GTCTC 6 cut(s) 212, 315, 441, 699, 761, 1174
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 3 cut(s) 985, 1193, 1212
AoxI GGCC 3 cut(s) 116, 291, 1229
ApeKI GCWGC 3 cut(s) 50, 61, 1031
ApoI RAATTY 1 cut(s) 965
Asp700I GAANNNNTTC 1 cut(s) 186
Asp718I GGTACC 4 cut(s) 313, 574, 760, 949
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 3 cut(s) 292, 1229, 1235
AsuC2I CCSGG 6 cut(s) 295, 493, 986, 987, 1213, 1214
AvaI CYCGRG 3 cut(s) 985, 1193, 1212
AvaII GGWCC 1 cut(s) 1235
BaeGI GKGCMC 2 cut(s) 993, 1057
BanI GGYRCC 9 cut(s) 313, 376, 440, 574, 636, 760, 822, 949, 990
BanII GRGCYC 1 cut(s) 1200
BbvI GCAGC 3 cut(s) 48, 62, 1018
BceAI ACGGC 2 cut(s) 905, 1039
BciT130I CCWGG 1 cut(s) 1233
BcnI CCSGG 6 cut(s) 295, 493, 986, 987, 1213, 1214
BcoDI GTCTC 6 cut(s) 212, 315, 441, 699, 761, 1174
BcuI ACTAGT 1 cut(s) 1081
BfaI CTAG 4 cut(s) 1082, 1163, 1176, 1188
BfmI CTRYAG 1 cut(s) 1071
BfoI RGCGCY 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 1094
BisI GCNGC 5 cut(s) 51, 62, 105, 893, 1032
BlsI GCNGC 5 cut(s) 52, 63, 106, 894, 1033
Bme1390I CCNGG 7 cut(s) 295, 493, 986, 987, 1213, 1214, 1233
Bme18I GGWCC 1 cut(s) 1235
BmeT110I CYCGRG 3 cut(s) 985, 1193, 1212
BmgT120I GGNCC 3 cut(s) 292, 1229, 1235
BmrFI CCNGG 7 cut(s) 295, 493, 986, 987, 1213, 1214, 1233
BplI GAGNNNNNCTC 6 cut(s) 406, 438, 852, 884, 915, 947
BpmI CTGGAG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 1020
BpuMI CCSGG 6 cut(s) 295, 493, 986, 987, 1213, 1214
BsaBI GATNNNNATC 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 1257
BsaJI CCNNGG 7 cut(s) 197, 288, 985, 986, 1212, 1225, 1248
BsaWI WCCGGW 3 cut(s) 577, 763, 952
Bsc4I CCNNNNNNNGG 3 cut(s) 294, 492, 986
Bse1I ACTGG 1 cut(s) 1142
Bse8I GATNNNNATC 1 cut(s) 277
BseBI CCWGG 1 cut(s) 1233
BseDI CCNNGG 7 cut(s) 197, 288, 985, 986, 1212, 1225, 1248
BseJI GATNNNNATC 1 cut(s) 277
BseLI CCNNNNNNNGG 3 cut(s) 294, 492, 986
BseNI ACTGG 1 cut(s) 1142
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 2 cut(s) 993, 1057
BseXI GCAGC 3 cut(s) 48, 62, 1018
BshFI GGCC 3 cut(s) 118, 293, 1231
BshNI GGYRCC 9 cut(s) 313, 376, 440, 574, 636, 760, 822, 949, 990
BsiHKCI CYCGRG 3 cut(s) 985, 1193, 1212
BslFI GGGAC 3 cut(s) 1077, 1098, 1163
BslI CCNNNNNNNGG 3 cut(s) 294, 492, 986
BsmAI GTCTC 6 cut(s) 212, 315, 441, 699, 761, 1174
BsmFI GGGAC 3 cut(s) 1077, 1098, 1163
BsnI GGCC 3 cut(s) 118, 293, 1231
BsoBI CYCGRG 3 cut(s) 985, 1193, 1212
Bsp1286I GDGCHC 3 cut(s) 993, 1057, 1200
Bsp1407I TGTACA 1 cut(s) 1155
Bsp143I GATC 2 cut(s) 235, 267
Bsp19I CCATGG 2 cut(s) 1225, 1248
BspACI CCGC 5 cut(s) 104, 483, 515, 892, 1253
BspANI GGCC 3 cut(s) 118, 293, 1231
BspPI GGATC 1 cut(s) 275
BspT107I GGYRCC 9 cut(s) 313, 376, 440, 574, 636, 760, 822, 949, 990
BspTI CTTAAG 1 cut(s) 1094
BsrGI TGTACA 1 cut(s) 1155
BsrI ACTGG 1 cut(s) 1142
BssECI CCNNGG 7 cut(s) 197, 288, 985, 986, 1212, 1225, 1248
BssMI GATC 2 cut(s) 235, 267
BssNI GRCGYC 1 cut(s) 1257
BssT1I CCWWGG 4 cut(s) 197, 288, 1225, 1248
Bst2UI CCWGG 1 cut(s) 1233
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 18, 1051
BstACI GRCGYC 1 cut(s) 1257
BstAFI CTTAAG 1 cut(s) 1094
BstAUI TGTACA 1 cut(s) 1155
BstC8I GCNNGC 2 cut(s) 483, 1255
BstDEI CTNAG 1 cut(s) 17
BstDSI CCRYGG 2 cut(s) 1225, 1248
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 238, 270
BstMAI GTCTC 6 cut(s) 212, 315, 441, 699, 761, 1174
BstMBI GATC 2 cut(s) 235, 267
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 1233
BstSCI CCNGG 7 cut(s) 293, 491, 984, 985, 1211, 1212, 1231
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 2 cut(s) 993, 1057
BstV1I GCAGC 3 cut(s) 48, 62, 1018
BsuRI GGCC 3 cut(s) 118, 293, 1231
BtgI CCRYGG 2 cut(s) 1225, 1248
Cac8I GCNNGC 2 cut(s) 483, 1255
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 3 cut(s) 292, 1229, 1235
Cfr9I CCCGGG 2 cut(s) 985, 1212
CseI GACGC 1 cut(s) 1246
CspCI CAANNNNNGTGG 2 cut(s) 236, 271
CviAII CATG 2 cut(s) 1226, 1249
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 237, 269
DpnII GATC 2 cut(s) 235, 267
Eam1104I CTCTTC 2 cut(s) 18, 1051
EarI CTCTTC 2 cut(s) 18, 1051
Eco130I CCWWGG 4 cut(s) 197, 288, 1225, 1248
Eco24I GRGCYC 1 cut(s) 1200
Eco47I GGWCC 1 cut(s) 1235
Eco88I CYCGRG 3 cut(s) 985, 1193, 1212
EcoRII CCWGG 1 cut(s) 1231
EcoT14I CCWWGG 4 cut(s) 197, 288, 1225, 1248
EcoT38I GRGCYC 1 cut(s) 1200
ErhI CCWWGG 4 cut(s) 197, 288, 1225, 1248
FaeI CATG 2 cut(s) 1229, 1252
FaiI YATR 8 cut(s) 121, 528, 899, 1073, 1160, 1227, 1250, 1264
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 3 cut(s) 1077, 1098, 1163
FatI CATG 2 cut(s) 1225, 1248
FauI CCCGC 3 cut(s) 490, 508, 1246
Fnu4HI GCNGC 5 cut(s) 51, 62, 105, 893, 1032
FriOI GRGCYC 1 cut(s) 1200
Fsp4HI GCNGC 5 cut(s) 51, 62, 105, 893, 1032
FspBI CTAG 4 cut(s) 1082, 1163, 1176, 1188
GlaI GCGC 1 cut(s) 108
GluI GCNGC 5 cut(s) 51, 62, 105, 893, 1032
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 3 cut(s) 118, 293, 1231
HgaI GACGC 1 cut(s) 1246
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 1257
Hin1II CATG 2 cut(s) 1229, 1252
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 6 cut(s) 13, 323, 449, 707, 743, 1167
Hpy166II GTNNAC 3 cut(s) 261, 1004, 1238
Hpy188I TCNGA 4 cut(s) 272, 414, 860, 923
Hpy188III TCNNGA 2 cut(s) 1037, 1132
Hpy8I GTNNAC 3 cut(s) 261, 1004, 1238
Hpy99I CGWCG 2 cut(s) 407, 1206
HpyAV CCTTC 3 cut(s) 28, 32, 176
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 1257
Hsp92II CATG 2 cut(s) 1229, 1252
HspAI GCGC 1 cut(s) 107
KpnI GGTACC 4 cut(s) 317, 578, 764, 953
Kzo9I GATC 2 cut(s) 235, 267
LmnI GCTCC 6 cut(s) 290, 414, 580, 642, 860, 923
Lsp1109I GCAGC 3 cut(s) 48, 62, 1018
MaeI CTAG 4 cut(s) 1082, 1163, 1176, 1188
MaeIII GTNAC 1 cut(s) 1258
MalI GATC 2 cut(s) 237, 269
MboI GATC 2 cut(s) 235, 267
MhlI GDGCHC 3 cut(s) 993, 1057, 1200
MluCI AATT 1 cut(s) 965
MlyI GAGTC 5 cut(s) 317, 443, 701, 737, 1176
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 4 cut(s) 144, 192, 275, 1095
MslI CAYNNNNRTG 2 cut(s) 1009, 1082
MspCI CTTAAG 1 cut(s) 1094
MspR9I CCNGG 7 cut(s) 295, 493, 986, 987, 1213, 1214, 1233
MvaI CCWGG 1 cut(s) 1233
MwoI GCNNNNNNNGC 1 cut(s) 115
NciI CCSGG 6 cut(s) 295, 493, 986, 987, 1213, 1214
NcoI CCATGG 2 cut(s) 1225, 1248
NdeII GATC 2 cut(s) 235, 267
NlaIII CATG 2 cut(s) 1229, 1252
NmuCI GTSAC 1 cut(s) 1258
OliI CACNNNNGTG 2 cut(s) 1009, 1082
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 5 cut(s) 52, 63, 106, 894, 1033
PleI GAGTC 5 cut(s) 317, 443, 701, 737, 1175
PpsI GAGTC 5 cut(s) 317, 443, 701, 737, 1175
Psp6I CCWGG 1 cut(s) 1231
PspGI CCWGG 1 cut(s) 1231
PspPI GGNCC 3 cut(s) 292, 1229, 1235
RseI CAYNNNNRTG 2 cut(s) 1009, 1082
SaqAI TTAA 4 cut(s) 144, 192, 275, 1095
SatI GCNGC 5 cut(s) 51, 62, 105, 893, 1032
Sau3AI GATC 2 cut(s) 235, 267
Sau96I GGNCC 3 cut(s) 292, 1229, 1235
SchI GAGTC 5 cut(s) 317, 443, 701, 737, 1176
ScrFI CCNGG 7 cut(s) 295, 493, 986, 987, 1213, 1214, 1233
SduI GDGCHC 3 cut(s) 993, 1057, 1200
SfcI CTRYAG 1 cut(s) 1071
SinI GGWCC 1 cut(s) 1235
SmaI CCCGGG 2 cut(s) 987, 1214
SmiMI CAYNNNNRTG 2 cut(s) 1009, 1082
SmlI CTYRAG 2 cut(s) 1035, 1094
SmoI CTYRAG 2 cut(s) 1035, 1094
SpeI ACTAGT 1 cut(s) 1081
Sse9I AATT 1 cut(s) 965
SsiI CCGC 5 cut(s) 104, 483, 515, 892, 1253
SspMI CTAG 4 cut(s) 1082, 1163, 1176, 1188
StyD4I CCNGG 7 cut(s) 293, 491, 984, 985, 1211, 1212, 1231
StyI CCWWGG 4 cut(s) 197, 288, 1225, 1248
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 8 cut(s) 350, 476, 548, 610, 672, 734, 796, 1049
TasI AATT 1 cut(s) 965
TatI WGTACW 2 cut(s) 175, 1155
TauI GCSGC 2 cut(s) 107, 895
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 4 cut(s) 144, 192, 275, 1095
Tru9I TTAA 4 cut(s) 144, 192, 275, 1095
TseFI GTSAC 1 cut(s) 1258
TseI GCWGC 3 cut(s) 50, 61, 1031
Tsp45I GTSAC 1 cut(s) 1258
TspDTI ATGAA 1 cut(s) 26
TspMI CCCGGG 2 cut(s) 985, 1212
Vha464I CTTAAG 1 cut(s) 1094
VpaK11BI GGWCC 1 cut(s) 1235
XapI RAATTY 1 cut(s) 965
XmaI CCCGGG 2 cut(s) 985, 1212
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 4 cut(s) 1082, 1163, 1176, 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.