Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Reverse (-)

36856164 .. 36872999

Gene Structure 16836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTGAAGTTTCTGCTGGAGCATTTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGTGAGAAGAAGATTGCCGGAGTATACACCCACCGCGGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCTCCAATGGTGAACTGGGCTAATTGGCCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAATGGTGATTGCCACTGTAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAGGATCAAACACGGGTTATTAAAGAAATCGAGGAATACGTCTTGAAACGCATACCACGCTCCAGTGAGGAAAAGAAGCTTGCGCCGTCCCCGCCGCCGCTCGTCGGCATCCGCCGCATCCGCCTCTTAGTCACCTGCCCCCACCCCCAGCCTCTGCCGCCCCCGCCCCCGCCCCCGGCAGTAGACGAGGTCACTAGCAATATCAGTGTCGAGGAGCAGAGTATTGAGCAAAATGTGGACGAGGTCACCAGCAATATCAGTGTCAAGGAGAATATCATCAGCATTGGTGGCAATGGGCACATCAATGAGCGTGAGGAGCAAAAGGGCACAGCGCATCAAAATCCGCAAAATCTGCAGCAAAATCTTGACAATCTTGACAGCAAAATCTTGAATGGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

246

Amino Acids

27.72

Weight (kDa)

5.89

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 120	5.9e-30	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
AccBSI	CCGCTC	1 cut(s)	439
AccI	GTMKAC	2 cut(s)	99, 522
AccII	CGCG	1 cut(s)	111
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	443, 514
AgsI	TTSAA	2 cut(s)	385, 730
AluBI	AGCT	2 cut(s)	181, 418
AluI	AGCT	2 cut(s)	181, 418
AlwI	GGATC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	3 cut(s)	66, 236, 268
ApeKI	GCWGC	2 cut(s)	209, 694
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	424, 673
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	5 cut(s)	16, 232, 293, 463, 577
BaeGI	GKGCMC	2 cut(s)	639, 668
BalI	TGGCCA	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	196, 706
BccI	CCATC	2 cut(s)	108, 279
BceAI	ACGGC	2 cut(s)	53, 409
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BcnI	CCSGG	1 cut(s)	515
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	692
BfuAI	ACCTGC	1 cut(s)	482
BisI	GCNGC	6 cut(s)	210, 434, 437, 454, 497, 695
BlsI	GCNGC	6 cut(s)	211, 435, 438, 455, 498, 696
Bme1390I	CCNGG	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	515
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	3 cut(s)	456, 465, 682
BmuI	ACTGGG	1 cut(s)	235
BpmI	CTGGAG	2 cut(s)	38, 385
BpuMI	CCSGG	1 cut(s)	515
BsaJI	CCNNGG	2 cut(s)	109, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 514
Bse1I	ACTGG	2 cut(s)	230, 402
Bse3DI	GCAATG	1 cut(s)	637
BseDI	CCNNGG	2 cut(s)	109, 513
BseGI	GGATG	3 cut(s)	119, 447, 456
BseLI	CCNNNNNNNGG	2 cut(s)	443, 514
BseMI	GCAATG	1 cut(s)	637
BseNI	ACTGG	2 cut(s)	230, 402
BseRI	GAGGAG	2 cut(s)	566, 668
BseSI	GKGCMC	2 cut(s)	639, 668
BseXI	GCAGC	2 cut(s)	196, 706
BseYI	CCCAGC	2 cut(s)	63, 486
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	68, 238, 270
BsiSI	CCGG	2 cut(s)	93, 515
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	2 cut(s)	443, 514
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	3 cut(s)	68, 238, 270
Bsp1286I	GDGCHC	2 cut(s)	639, 668
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	3 cut(s)	68, 238, 270
BspFNI	CGCG	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	696
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	351
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	637
BsrI	ACTGG	2 cut(s)	230, 402
BssECI	CCNNGG	2 cut(s)	109, 513
BssMI	GATC	1 cut(s)	343
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	691
BstC8I	GCNNGC	2 cut(s)	268, 420
BstDEI	CTNAG	1 cut(s)	466
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	583
BstF5I	GGATG	3 cut(s)	119, 447, 456
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	424, 673
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	9 cut(s)	396, 430, 453, 459, 496, 502, 627, 655, 691
BstNSI	RCATGY	1 cut(s)	148
BstPI	GGTNACC	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	692
BstSLI	GKGCMC	2 cut(s)	639, 668
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	196, 706
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	3 cut(s)	68, 238, 270
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	119, 447, 456
BtsIMutI	CAGTG	4 cut(s)	289, 409, 550, 604
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	2 cut(s)	268, 420
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	2 cut(s)	424, 673
Cfr13I	GGNCC	1 cut(s)	66
Cfr42I	CCGCGG	1 cut(s)	112
CviAII	CATG	5 cut(s)	139, 145, 176, 188, 245
CviJI	RGCY	8 cut(s)	68, 181, 209, 230, 238, 270, 418, 490
CviKI_1	RGCY	8 cut(s)	68, 181, 209, 230, 238, 270, 418, 490
DdeI	CTNAG	1 cut(s)	466
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	268
EciI	GGCGGA	2 cut(s)	440, 449
Eco91I	GGTNACC	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	583
FaeI	CATG	5 cut(s)	142, 148, 179, 191, 248
FaiI	YATR	7 cut(s)	100, 140, 146, 177, 189, 246, 392
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	5 cut(s)	138, 144, 175, 187, 244
FauI	CCCGC	3 cut(s)	438, 510, 516
FblI	GTMKAC	2 cut(s)	99, 522
Fnu4HI	GCNGC	6 cut(s)	210, 434, 437, 454, 497, 695
FokI	GGATG	3 cut(s)	126, 434, 443
Fsp4HI	GCNGC	6 cut(s)	210, 434, 437, 454, 497, 695
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	2 cut(s)	423, 672
GluI	GCNGC	6 cut(s)	210, 434, 437, 454, 497, 695
GsaI	CCCAGC	2 cut(s)	67, 490
GsuI	CTGGAG	2 cut(s)	38, 385
HaeIII	GGCC	3 cut(s)	68, 238, 270
HapII	CCGG	2 cut(s)	93, 515
HhaI	GCGC	2 cut(s)	424, 673
Hin1II	CATG	5 cut(s)	142, 148, 179, 191, 248
Hin6I	GCGC	2 cut(s)	422, 671
HinP1I	GCGC	2 cut(s)	422, 671
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	259, 323, 735
HpaII	CCGG	2 cut(s)	93, 515
HphI	GGTGA	5 cut(s)	16, 232, 293, 463, 577
Hpy166II	GTNNAC	7 cut(s)	100, 160, 223, 296, 337, 523, 577
Hpy188III	TCNNGA	5 cut(s)	327, 382, 704, 713, 727
Hpy8I	GTNNAC	7 cut(s)	100, 160, 223, 296, 337, 523, 577
Hpy99I	CGWCG	1 cut(s)	446
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	2 cut(s)	298, 378
HpyCH4V	TGCA	2 cut(s)	148, 694
HpyF10VI	GCNNNNNNNGC	9 cut(s)	396, 430, 453, 459, 496, 502, 627, 655, 691
HpyF3I	CTNAG	1 cut(s)	466
HpySE526I	ACGT	2 cut(s)	298, 378
Hsp92II	CATG	5 cut(s)	142, 148, 179, 191, 248
HspAI	GCGC	2 cut(s)	422, 671
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	5 cut(s)	19, 217, 404, 553, 655
Lsp1109I	GCAGC	2 cut(s)	196, 706
LweI	GCATC	3 cut(s)	456, 465, 682
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	2 cut(s)	298, 378
MaeIII	GTNAC	3 cut(s)	469, 529, 583
MalI	GATC	1 cut(s)	345
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	1 cut(s)	343
MboII	GAAGA	3 cut(s)	94, 97, 332
MhlI	GDGCHC	2 cut(s)	639, 668
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	4 cut(s)	183, 232, 302, 330
MluNI	TGGCCA	1 cut(s)	270
Mox20I	TGGCCA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	2 cut(s)	276, 360
MslI	CAYNNNNRTG	3 cut(s)	143, 276, 642
Msp20I	TGGCCA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	2 cut(s)	93, 515
MspR9I	CCNGG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	9 cut(s)	396, 430, 453, 459, 496, 502, 627, 655, 691
NciI	CCSGG	1 cut(s)	515
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	5 cut(s)	142, 148, 179, 191, 248
NmuCI	GTSAC	3 cut(s)	469, 529, 583
NspI	RCATGY	1 cut(s)	148
PaqCI	CACCTGC	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	259, 323, 735
PflFI	GACNNNGTC	2 cut(s)	527, 581
PkrI	GCNGC	6 cut(s)	211, 435, 438, 455, 498, 696
PspEI	GGTNACC	1 cut(s)	583
PspFI	CCCAGC	2 cut(s)	63, 486
PspPI	GGNCC	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	696
PstNI	CAGNNNCTG	1 cut(s)	493
PsyI	GACNNNGTC	2 cut(s)	527, 581
RseI	CAYNNNNRTG	3 cut(s)	143, 276, 642
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	276, 360
SatI	GCNGC	6 cut(s)	210, 434, 437, 454, 497, 695
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	2 cut(s)	639, 668
SetI	ASST	8 cut(s)	159, 183, 301, 381, 420, 476, 531, 585
SfaNI	GCATC	3 cut(s)	456, 465, 682
SfcI	CTRYAG	1 cut(s)	692
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	3 cut(s)	143, 276, 642
Sse9I	AATT	4 cut(s)	183, 232, 302, 330
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	2 cut(s)	301, 381
TaqI	TCGA	3 cut(s)	326, 369, 549
TasI	AATT	4 cut(s)	183, 232, 302, 330
TauI	GCSGC	4 cut(s)	436, 439, 456, 499
TfiI	GAWTC	3 cut(s)	259, 323, 735
Tru1I	TTAA	2 cut(s)	276, 360
Tru9I	TTAA	2 cut(s)	276, 360
TscAI	CASTG	4 cut(s)	296, 409, 550, 604
TseFI	GTSAC	3 cut(s)	469, 529, 583
TseI	GCWGC	2 cut(s)	209, 694
Tsp45I	GTSAC	3 cut(s)	469, 529, 583
TspDTI	ATGAA	3 cut(s)	62, 155, 176
TspRI	CASTG	4 cut(s)	296, 409, 550, 604
Tth111I	GACNNNGTC	2 cut(s)	527, 581
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	222
XmiI	GTMKAC	2 cut(s)	99, 522
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.