Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Forward (+)

4426599 .. 4429613

Gene Structure 3015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTGAAGTTTATGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCGCAGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTTCTGTGCCAAGAAGATTCGAGAATTGTGAACAAATTCCAGGCAGAAACAGGGTCTCCATGCATAGCAGCCCACATTTTCAGGATTGAAGGAGCGGTTGCTGCTCATAATTTTGCTCCTGTGTTCATAATCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTTTGGGCAGTCTTGGAGAATATTACTTGCAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

138

Amino Acids

15.48

Weight (kDa)

6.13

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 55	3.1e-07	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	3 cut(s)	106, 109, 308
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	3 cut(s)	165, 209, 248
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	2 cut(s)	66, 175
ApeKI	GCWGC	2 cut(s)	281, 314
ApoI	RAATTY	3 cut(s)	165, 209, 248
Asp700I	GAANNNNTTC	2 cut(s)	213, 248
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	16, 200
BalI	TGGCCA	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	293, 301
BccI	CCATC	3 cut(s)	108, 186, 365
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	109, 282, 315
BlsI	GCNGC	3 cut(s)	110, 283, 316
Bme1390I	CCNGG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	38, 47
BsaBI	GATNNNNATC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	254
BseJI	GATNNNNATC	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	293, 301
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	68, 177
BsiSI	CCGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	68, 177
Bso31I	GGTCTC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	3 cut(s)	106, 109, 308
BspANI	GGCC	2 cut(s)	68, 177
BspHI	TCATGA	1 cut(s)	413
BspPI	GGATC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	73
BssMI	GATC	1 cut(s)	376
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	293, 301
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	68, 177
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	175
CciI	TCATGA	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	66
CviAII	CATG	4 cut(s)	139, 145, 273, 414
CviJI	RGCY	3 cut(s)	68, 177, 284
CviKI_1	RGCY	3 cut(s)	68, 177, 284
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	278
FaeI	CATG	4 cut(s)	142, 148, 276, 417
FaiI	YATR	9 cut(s)	14, 100, 140, 146, 274, 278, 321, 341, 415
FatI	CATG	4 cut(s)	138, 144, 272, 413
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	109, 282, 315
Fsp4HI	GCNGC	3 cut(s)	109, 282, 315
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	3 cut(s)	109, 282, 315
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	2 cut(s)	38, 47
HaeIII	GGCC	2 cut(s)	68, 177
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	4 cut(s)	142, 148, 276, 417
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	16, 200
Hpy166II	GTNNAC	4 cut(s)	100, 160, 203, 244
Hpy188III	TCNNGA	5 cut(s)	26, 234, 295, 368, 414
Hpy8I	GTNNAC	4 cut(s)	100, 160, 203, 244
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	148, 276, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	4 cut(s)	142, 148, 276, 417
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	3 cut(s)	19, 305, 334
Lsp1109I	GCAGC	2 cut(s)	293, 301
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	205
MalI	GATC	1 cut(s)	378
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	1 cut(s)	376
MboII	GAAGA	3 cut(s)	94, 97, 239
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	5 cut(s)	165, 209, 237, 248, 322
MluNI	TGGCCA	1 cut(s)	177
MnlI	CCTC	1 cut(s)	148
Mox20I	TGGCCA	1 cut(s)	177
Mph1103I	ATGCAT	1 cut(s)	278
MroXI	GAANNNNTTC	2 cut(s)	213, 248
MscI	TGGCCA	1 cut(s)	177
MslI	CAYNNNNRTG	2 cut(s)	143, 183
Msp20I	TGGCCA	1 cut(s)	177
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	4 cut(s)	142, 148, 276, 417
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	1 cut(s)	148
PagI	TCATGA	1 cut(s)	413
PdmI	GAANNNNTTC	2 cut(s)	213, 248
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	110, 283, 316
Psp6I	CCWGG	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	143, 183
SatI	GCNGC	3 cut(s)	109, 282, 315
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	2 cut(s)	159, 208
SfaNI	GCATC	1 cut(s)	31
SmiMI	CAYNNNNRTG	2 cut(s)	143, 183
Sse9I	AATT	5 cut(s)	165, 209, 237, 248, 322
SsiI	CCGC	3 cut(s)	106, 109, 308
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	233
TasI	AATT	5 cut(s)	165, 209, 237, 248, 322
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	2 cut(s)	281, 314
TspDTI	ATGAA	3 cut(s)	62, 155, 328
TspRI	CASTG	1 cut(s)	203
XapI	RAATTY	3 cut(s)	165, 209, 248
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	2 cut(s)	213, 248
XspI	CTAG	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.