Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Forward (+)

8966616 .. 8980220

Gene Structure 13605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG103900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTGAAGTTTCTGCTGGAGCATTTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGTCGCGGATGGATAATGGTGTGTAGTAATCACATGTACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTTGGGCTGCTCCGATGGTGAACTGGGCTAATTGCCCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGCATTTTTGCTGTGCCTAGAAGATTCGAGAATTGTGAACAACAAACCAAAACATGATGAAAGCAATAGTTTTGGGATGAGATTGATGACCACTAATTGGGATGGAAGAGTCACATTCTTATCAGAGACAAGAGATACTAGTTTTACGTTTCTTCAGCTAGCTAGATACTTAGATGAGAGCGTATTCGGTGCACCGCATTTACATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

169

Amino Acids

19.34

Weight (kDa)

6.28

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 103	1.4e-29	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	111, 494
AcoI	YGGCCR	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflIII	ACRYGT	1 cut(s)	138
AhlI	ACTAGT	1 cut(s)	437
AluBI	AGCT	3 cut(s)	181, 457, 461
AluI	AGCT	3 cut(s)	181, 457, 461
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	419
Alw44I	GTGCAC	1 cut(s)	489
AoxI	GGCC	2 cut(s)	66, 268
ApaLI	GTGCAC	1 cut(s)	489
ApeKI	GCWGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	16, 232, 293
AsuNHI	GCTAGC	1 cut(s)	457
BaeGI	GKGCMC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	4 cut(s)	108, 211, 279, 395
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BcoDI	GTCTC	1 cut(s)	419
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	4 cut(s)	317, 438, 458, 462
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	235
BmtI	GCTAGC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	73
BseGI	GGATG	3 cut(s)	119, 381, 406
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	68, 270
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	68, 270
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp1407I	TGTACA	1 cut(s)	141
BspACI	CCGC	2 cut(s)	111, 494
BspANI	GGCC	2 cut(s)	68, 270
BspFNI	CGCG	1 cut(s)	111
BspOI	GCTAGC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	230
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	400
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	268, 459
BstDEI	CTNAG	2 cut(s)	275, 469
BstF5I	GGATG	3 cut(s)	119, 381, 406
BstFNI	CGCG	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	419
BstNSI	RCATGY	2 cut(s)	142, 148
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	68, 270
BtsCI	GGATG	3 cut(s)	119, 381, 406
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	268, 459
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	6 cut(s)	139, 145, 176, 188, 245, 353
CviJI	RGCY	7 cut(s)	68, 181, 209, 230, 270, 457, 461
CviKI_1	RGCY	7 cut(s)	68, 181, 209, 230, 270, 457, 461
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	275, 469
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	437
FaeI	CATG	6 cut(s)	142, 148, 179, 191, 248, 356
FaiI	YATR	7 cut(s)	100, 140, 146, 177, 189, 246, 354
FatI	CATG	6 cut(s)	138, 144, 175, 187, 244, 352
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	126, 388, 413
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	4 cut(s)	317, 438, 458, 462
GluI	GCNGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	68, 270
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	6 cut(s)	142, 148, 179, 191, 248, 356
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	259, 323, 408
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	16, 232, 293
Hpy166II	GTNNAC	6 cut(s)	100, 160, 223, 296, 337, 491
Hpy188I	TCNGA	2 cut(s)	216, 424
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	6 cut(s)	100, 160, 223, 296, 337, 491
Hpy99I	CGWCG	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	2 cut(s)	298, 446
HpyCH4V	TGCA	3 cut(s)	148, 302, 491
HpyF3I	CTNAG	2 cut(s)	275, 469
HpySE526I	ACGT	2 cut(s)	298, 446
Hsp92II	CATG	6 cut(s)	142, 148, 179, 191, 248, 356
LmnI	GCTCC	2 cut(s)	19, 217
LpnPI	CCDG	6 cut(s)	2, 21, 49, 106, 211, 252
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	4 cut(s)	317, 438, 458, 462
MaeII	ACGT	2 cut(s)	298, 446
MaeIII	GTNAC	1 cut(s)	409
MboII	GAAGA	5 cut(s)	94, 97, 332, 417, 443
MhlI	GDGCHC	1 cut(s)	493
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	4 cut(s)	183, 232, 330, 394
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	2 cut(s)	148, 249
Mox20I	TGGCCA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	143, 276
Msp20I	TGGCCA	1 cut(s)	270
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	111
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	6 cut(s)	142, 148, 179, 191, 248, 356
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	2 cut(s)	142, 148
PciI	ACATGT	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	259, 323
PflMI	CCANNNNNTGG	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PscI	ACATGT	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	2 cut(s)	143, 276
SatI	GCNGC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	493
SetI	ASST	6 cut(s)	159, 183, 301, 449, 459, 463
SmiMI	CAYNNNNRTG	2 cut(s)	143, 276
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	4 cut(s)	183, 232, 330, 394
SsiI	CCGC	2 cut(s)	111, 494
SspMI	CTAG	4 cut(s)	317, 438, 458, 462
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	2 cut(s)	301, 449
TaqI	TCGA	1 cut(s)	326
TasI	AATT	4 cut(s)	183, 232, 330, 394
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	259, 323
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	62, 176, 372
TspRI	CASTG	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	396
VneI	GTGCAC	1 cut(s)	489
XceI	RCATGY	2 cut(s)	142, 148
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	4 cut(s)	317, 438, 458, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.