Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Forward (+)

81826294 .. 81829353

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG476500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTGAAGTTTATGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGTCGGAGTATACACCCGCCGCGGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAATTCCAAGCAGAAACAGGGTCTCCATGCATAGCAGCCCACATTTTCAGGATTGAAGGAGCGGTTGCTGCTCATAATTTTGCTCCTGTGTTCATAATCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTTTGGGCAGGTTGAAATTAACATCTTTCTCTGATCTTTTTCAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

142

Amino Acids

15.86

Weight (kDa)

6.36

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 55	1.9e-06	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AccBSI	CCGCTC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	106, 109, 111, 308
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	3 cut(s)	165, 209, 248
AgsI	TTSAA	2 cut(s)	302, 394
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	2 cut(s)	66, 175
ApeKI	GCWGC	2 cut(s)	281, 314
ApoI	RAATTY	3 cut(s)	165, 209, 248
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	16, 200
BalI	TGGCCA	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	293, 301
BccI	CCATC	3 cut(s)	108, 186, 365
BceAI	ACGGC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	3 cut(s)	109, 282, 315
BlsI	GCNGC	3 cut(s)	110, 283, 316
BmgT120I	GGNCC	1 cut(s)	66
BmsI	GCATC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	38, 47
BsaBI	GATNNNNATC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	119
BseJI	GATNNNNATC	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	293, 301
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	68, 177
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	68, 177
Bso31I	GGTCTC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	376, 412
BspACI	CCGC	4 cut(s)	106, 109, 111, 308
BspANI	GGCC	2 cut(s)	68, 177
BspFNI	CGCG	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	376, 412
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	182, 426
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	119
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	379, 415
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	376, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	148
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	293, 301
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	68, 177
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	66
Cfr42I	CCGCGG	1 cut(s)	112
CviAII	CATG	3 cut(s)	139, 145, 273
CviJI	RGCY	3 cut(s)	68, 177, 284
CviKI_1	RGCY	3 cut(s)	68, 177, 284
DdeI	CTNAG	2 cut(s)	182, 426
DpnI	GATC	2 cut(s)	378, 414
DpnII	GATC	2 cut(s)	376, 412
EaeI	YGGCCR	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	278
FaeI	CATG	3 cut(s)	142, 148, 276
FaiI	YATR	8 cut(s)	14, 100, 140, 146, 274, 278, 321, 341
FatI	CATG	3 cut(s)	138, 144, 272
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	109, 282, 315
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	109, 282, 315
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	3 cut(s)	109, 282, 315
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	2 cut(s)	38, 47
HaeIII	GGCC	2 cut(s)	68, 177
Hin1II	CATG	3 cut(s)	142, 148, 276
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	2 cut(s)	16, 200
Hpy166II	GTNNAC	4 cut(s)	100, 160, 203, 244
Hpy188I	TCNGA	2 cut(s)	95, 412
Hpy188III	TCNNGA	4 cut(s)	26, 234, 295, 368
Hpy8I	GTNNAC	4 cut(s)	100, 160, 203, 244
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	148, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	2 cut(s)	182, 426
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	142, 148, 276
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	376, 412
LmnI	GCTCC	3 cut(s)	19, 305, 334
Lsp1109I	GCAGC	2 cut(s)	293, 301
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	205
MalI	GATC	2 cut(s)	378, 414
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	2 cut(s)	376, 412
MboII	GAAGA	3 cut(s)	94, 97, 239
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	6 cut(s)	165, 209, 237, 248, 322, 395
MluNI	TGGCCA	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	1 cut(s)	148
Mox20I	TGGCCA	1 cut(s)	177
Mph1103I	ATGCAT	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	2 cut(s)	143, 183
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	2 cut(s)	376, 412
NlaIII	CATG	3 cut(s)	142, 148, 276
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	110, 283, 316
PspFI	CCCAGC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	143, 183
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	3 cut(s)	109, 282, 315
Sau3AI	GATC	2 cut(s)	376, 412
Sau96I	GGNCC	1 cut(s)	66
SetI	ASST	3 cut(s)	159, 208, 392
SfaNI	GCATC	1 cut(s)	31
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	143, 183
Sse9I	AATT	6 cut(s)	165, 209, 237, 248, 322, 395
SsiI	CCGC	4 cut(s)	106, 109, 111, 308
SspMI	CTAG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	233
TasI	AATT	6 cut(s)	165, 209, 237, 248, 322, 395
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	2 cut(s)	281, 314
TspDTI	ATGAA	3 cut(s)	62, 155, 328
TspRI	CASTG	1 cut(s)	203
XapI	RAATTY	3 cut(s)	165, 209, 248
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.