Rroxscaffold_1G00022620

Mitochondrial inner membrane protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000640
Physical Location & Seq
Forward (+)
27961454 .. 27969479
8026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022620.1

Sequence Viewer

Length: 336 bp
ATGGTGAAGTTTCTGCTGGAGCATCCGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGCTTGCCGGAAGAAGATTACAAGCACAAGAAGGAGTTCTTAATCCAAGGTGCTTCAAGGTGGAGGAGACACACACAAGGAGAGATCAAAGAGAGGAACTTTGGTGGTTCACTTGGATCGGATTAAAATCACGCTCCAAGGGAAGTGTAGTAAGGCGGCGACTTTTGGAGGAATTTGACCCAATCGGTTCTCCGATCTCCGACGTCGGCGAGGCTTCAAATCGAGCTTGGGGAGCTCGGGCGCCTCCTTGA

Protein Analysis

111

Amino Acids

12.69

Weight (kDa)

9.1

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 325
AccIII TCCGGA 1 cut(s) 25
AciI CCGC 1 cut(s) 241
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 2 cut(s) 288, 326
AgsI TTSAA 2 cut(s) 142, 303
AluBI AGCT 3 cut(s) 88, 311, 320
AluI AGCT 3 cut(s) 88, 311, 320
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 321
Aor13HI TCCGGA 1 cut(s) 25
AoxI GGCC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 321
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 329
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 211
BsaHI GRCGYC 2 cut(s) 288, 326
BsaJI CCNNGG 2 cut(s) 131, 222
BsaWI WCCGGW 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 211
BseAI TCCGGA 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 131, 222
BseGI GGATG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 211
BseMI GCAATG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 26, 93
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 322
Bsp13I TCCGGA 1 cut(s) 25
Bsp143I GATC 3 cut(s) 169, 201, 279
BspACI CCGC 1 cut(s) 241
BspANI GGCC 1 cut(s) 68
BspEI TCCGGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 131, 222
BssMI GATC 3 cut(s) 169, 201, 279
BssNI GRCGYC 2 cut(s) 288, 326
BssT1I CCWWGG 2 cut(s) 131, 222
BstACI GRCGYC 2 cut(s) 288, 326
BstC8I GCNNGC 1 cut(s) 90
BstF5I GGATG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 3 cut(s) 172, 204, 282
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 3 cut(s) 169, 201, 279
BstMWI GCNNNNNNNGC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 66
CviJI RGCY 5 cut(s) 68, 88, 299, 311, 320
CviKI_1 RGCY 5 cut(s) 68, 88, 299, 311, 320
DinI GGCGCC 1 cut(s) 327
DpnI GATC 3 cut(s) 171, 203, 281
DpnII GATC 3 cut(s) 169, 201, 279
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 2 cut(s) 131, 222
Eco24I GRGCYC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 131, 222
EcoT38I GRGCYC 1 cut(s) 322
EgeI GGCGCC 1 cut(s) 327
EheI GGCGCC 1 cut(s) 327
ErhI CCWWGG 2 cut(s) 131, 222
FalI AAGNNNNNCTT 2 cut(s) 108, 140
Fnu4HI GCNGC 1 cut(s) 242
FokI GGATG 1 cut(s) 9
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 242
GlaI GCGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 242
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 26, 93
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 2 cut(s) 288, 326
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 86
HpaII CCGG 2 cut(s) 26, 93
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 206, 279, 286
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 2 cut(s) 290, 293
HpyAV CCTTC 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 2 cut(s) 288, 326
HspAI GCGC 1 cut(s) 326
KasI GGCGCC 1 cut(s) 325
Kpn2I TCCGGA 1 cut(s) 25
Kzo9I GATC 3 cut(s) 169, 201, 279
LmnI GCTCC 3 cut(s) 19, 224, 317
LpnPI CCDG 5 cut(s) 2, 21, 39, 49, 106
LweI GCATC 1 cut(s) 31
MaeII ACGT 1 cut(s) 288
MalI GATC 3 cut(s) 171, 203, 281
MboI GATC 3 cut(s) 169, 201, 279
MboII GAAGA 3 cut(s) 94, 108, 111
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 1 cut(s) 257
Mly113I GGCGCC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 4 cut(s) 142, 172, 247, 289
MroI TCCGGA 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 126, 209
MspI CCGG 2 cut(s) 26, 93
MwoI GCNNNNNNNGC 1 cut(s) 317
NarI GGCGCC 1 cut(s) 326
NdeII GATC 3 cut(s) 169, 201, 279
NlaIV GGNNCC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 243
PluTI GGCGCC 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 322
PspFI CCCAGC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 66
SacI GAGCTC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 126, 209
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 3 cut(s) 169, 201, 279
Sau96I GGNCC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 322
SetI ASST 6 cut(s) 90, 137, 147, 291, 313, 322
SfaNI GCATC 1 cut(s) 31
SfoI GGCGCC 1 cut(s) 327
Sse9I AATT 1 cut(s) 257
SsiI CCGC 1 cut(s) 241
SspDI GGCGCC 1 cut(s) 325
SstI GAGCTC 1 cut(s) 322
StyI CCWWGG 2 cut(s) 131, 222
TaiI ACGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 307
TasI AATT 1 cut(s) 257
TauI GCSGC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 126, 209
Tru9I TTAA 2 cut(s) 126, 209
TspDTI ATGAA 1 cut(s) 62
XapI RAATTY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 120
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.