Rroxscaffold_2G00121440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000640
Physical Location & Seq
Forward (+)
54069859 .. 54084956
15098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121440.1

Sequence Viewer

Length: 372 bp
ATGGCCGGGTCGTTTGTGAAGGATGCGGTGAAAGAGAGAAGTCAACCTCCACCTTGCTGTACTCCGGTGACCGGACTCCGGCCGCAGACTCCGGCGGCCGGTGACCGATTCCTGCAACCAATCACCAAAATCAGGCAACCGGTCGCCGGAATCCCTAATCCAGCTACCGGACTGGTGACCAAATTCCAGCAGTCTGAAAACATCTACTTGGAGCCTCAAAATGAGAATGATAAATCAGTTTTCTCTCGTAAATGGTTTCCAACACCAAGGTTTCCAAGAATCACCGAATACTTCCACAAAAATTTTCCAAGGGTGGGAAGAGCATGTAGGATGAACAAAGTGGTTCATCCAATAAAAATTCATGAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

10.1

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 26, 83, 95
AcoI YGGCCR 3 cut(s) 3, 80, 96
AcsI RAATTY 3 cut(s) 182, 301, 357
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 7 cut(s) 71, 78, 98, 132, 146, 167, 314
AgeI ACCGGT 1 cut(s) 139
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
AoxI GGCC 3 cut(s) 3, 80, 96
ApoI RAATTY 3 cut(s) 182, 301, 357
AsiGI ACCGGT 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 6 cut(s) 40, 79, 113, 115, 187, 274
BcnI CCSGG 1 cut(s) 7
BisI GCNGC 2 cut(s) 83, 96
BlsI GCNGC 2 cut(s) 84, 97
Bme1390I CCNGG 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 266, 308
BsaWI WCCGGW 4 cut(s) 64, 71, 139, 167
Bsc4I CCNNNNNNNGG 7 cut(s) 71, 78, 98, 132, 146, 167, 314
Bse118I RCCGGY 2 cut(s) 98, 139
Bse1I ACTGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 266, 308
BseGI GGATG 3 cut(s) 28, 336, 346
BseLI CCNNNNNNNGG 7 cut(s) 71, 78, 98, 132, 146, 167, 314
BseNI ACTGG 1 cut(s) 177
BseX3I CGGCCG 2 cut(s) 80, 96
Bsh1285I CGRYCG 3 cut(s) 83, 99, 144
BshFI GGCC 3 cut(s) 5, 82, 98
BshTI ACCGGT 1 cut(s) 139
BsiEI CGRYCG 3 cut(s) 83, 99, 144
BsiSI CCGG 9 cut(s) 6, 65, 72, 79, 92, 99, 140, 147, 168
BslI CCNNNNNNNGG 7 cut(s) 71, 78, 98, 132, 146, 167, 314
BsnI GGCC 3 cut(s) 5, 82, 98
BspACI CCGC 3 cut(s) 26, 83, 95
BspANI GGCC 3 cut(s) 5, 82, 98
BspHI TCATGA 2 cut(s) 361, 368
BspLI GGNNCC 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 313
BsrFI RCCGGY 2 cut(s) 98, 139
BsrI ACTGG 1 cut(s) 177
BssAI RCCGGY 2 cut(s) 98, 139
BssECI CCNNGG 2 cut(s) 266, 308
BssT1I CCWWGG 2 cut(s) 266, 308
Bst6I CTCTTC 1 cut(s) 313
BstEII GGTNACC 3 cut(s) 67, 101, 175
BstF5I GGATG 3 cut(s) 28, 336, 346
BstMCI CGRYCG 3 cut(s) 83, 99, 144
BstNSI RCATGY 1 cut(s) 327
BstPI GGTNACC 3 cut(s) 67, 101, 175
BstSCI CCNGG 1 cut(s) 5
BstZI CGGCCG 2 cut(s) 80, 96
BsuRI GGCC 3 cut(s) 5, 82, 98
BtsCI GGATG 3 cut(s) 28, 336, 346
CciI TCATGA 2 cut(s) 361, 368
Cfr10I RCCGGY 2 cut(s) 98, 139
Csp6I GTAC 1 cut(s) 60
CspAI ACCGGT 1 cut(s) 139
CviAII CATG 3 cut(s) 324, 362, 369
CviJI RGCY 5 cut(s) 5, 82, 98, 164, 214
CviKI_1 RGCY 5 cut(s) 5, 82, 98, 164, 214
CviQI GTAC 1 cut(s) 60
EaeI YGGCCR 3 cut(s) 3, 80, 96
EagI CGGCCG 2 cut(s) 80, 96
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
EclXI CGGCCG 2 cut(s) 80, 96
Eco130I CCWWGG 2 cut(s) 266, 308
Eco52I CGGCCG 2 cut(s) 80, 96
Eco91I GGTNACC 3 cut(s) 67, 101, 175
EcoO65I GGTNACC 3 cut(s) 67, 101, 175
EcoT14I CCWWGG 2 cut(s) 266, 308
ErhI CCWWGG 2 cut(s) 266, 308
FaeI CATG 3 cut(s) 327, 365, 372
FaiI YATR 3 cut(s) 325, 363, 370
FatI CATG 3 cut(s) 323, 361, 368
Fnu4HI GCNGC 2 cut(s) 83, 96
FokI GGATG 3 cut(s) 35, 333, 343
Fsp4HI GCNGC 2 cut(s) 83, 96
GluI GCNGC 2 cut(s) 83, 96
HaeIII GGCC 3 cut(s) 5, 82, 98
HapII CCGG 9 cut(s) 6, 65, 72, 79, 92, 99, 140, 147, 168
Hin1II CATG 3 cut(s) 327, 365, 372
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HinfI GANTC 6 cut(s) 75, 88, 108, 150, 279, 365
HpaII CCGG 9 cut(s) 6, 65, 72, 79, 92, 99, 140, 147, 168
HphI GGTGA 6 cut(s) 40, 79, 113, 115, 187, 274
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 362, 369
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 115
Hsp92II CATG 3 cut(s) 327, 365, 372
LguI GCTCTTC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 211
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 3 cut(s) 67, 101, 175
MboII GAAGA 1 cut(s) 330
MluCI AATT 3 cut(s) 182, 301, 357
MlyI GAGTC 2 cut(s) 69, 82
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 2 cut(s) 57, 225
MspI CCGG 9 cut(s) 6, 65, 72, 79, 92, 99, 140, 147, 168
MspR9I CCNGG 1 cut(s) 7
NciI CCSGG 1 cut(s) 7
NlaIII CATG 3 cut(s) 327, 365, 372
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 3 cut(s) 67, 101, 175
NspI RCATGY 1 cut(s) 327
PagI TCATGA 2 cut(s) 361, 368
PciSI GCTCTTC 1 cut(s) 313
PfeI GAWTC 4 cut(s) 108, 150, 279, 365
PinAI ACCGGT 1 cut(s) 139
PkrI GCNGC 2 cut(s) 84, 97
PleI GAGTC 2 cut(s) 69, 82
PpsI GAGTC 2 cut(s) 69, 82
PspEI GGTNACC 3 cut(s) 67, 101, 175
PspN4I GGNNCC 1 cut(s) 213
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 313
SatI GCNGC 2 cut(s) 83, 96
SchI GAGTC 2 cut(s) 69, 82
ScrFI CCNGG 1 cut(s) 7
SetI ASST 4 cut(s) 49, 55, 166, 272
SfaNI GCATC 1 cut(s) 13
Sse9I AATT 3 cut(s) 182, 301, 357
SsiI CCGC 3 cut(s) 26, 83, 95
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 2 cut(s) 266, 308
TaqII GACCGA 1 cut(s) 120
TasI AATT 3 cut(s) 182, 301, 357
TatI WGTACW 1 cut(s) 59
TauI GCSGC 2 cut(s) 85, 98
TfiI GAWTC 4 cut(s) 108, 150, 279, 365
TseFI GTSAC 3 cut(s) 67, 101, 175
Tsp45I GTSAC 3 cut(s) 67, 101, 175
TspDTI ATGAA 3 cut(s) 335, 347, 350
XapI RAATTY 3 cut(s) 182, 301, 357
XceI RCATGY 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.