Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Forward (+)

16061161 .. 16065468

Gene Structure 4308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGTGTGGATTACTACAAGCTTTTACAGGTTGAGTGGTGCGCCACAGATGATGAATTGAAGAAGGCTTATAGAAAATTGGCGATAAGAAACCCCGCCAATAATAAAGAAGCTGAGACCAAATTCAAGCAGATCTCTGAGGCCTATGAGAAGGATGTTTCTGAGTCGGGCACGTACTCAGGCCAGCTGGGTTCTTTCAATTTCGTCATCATCATTTACAACTTGAAGGCTTCAAGGCTCGTCGGTTTGCCCTCCCATGCCAGCATGGATAACGTACCCAATTATTCTTTGCCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

99

Amino Acids

11.24

Weight (kDa)

7.79

Isoelectric Point (pI)

22.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 50	4.2e-12	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	2 cut(s)	176, 276
AgsI	TTSAA	5 cut(s)	61, 127, 199, 226, 234
AluBI	AGCT	3 cut(s)	22, 113, 187
AluI	AGCT	3 cut(s)	22, 113, 187
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	2 cut(s)	141, 181
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	160
BseMII	CTCAG	4 cut(s)	105, 129, 153, 192
BseSI	GKGCMC	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	143, 183
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	143, 183
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	143, 183
BspCNI	CTCAG	4 cut(s)	106, 130, 154, 191
BspTNI	GGTCTC	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	185, 262
BstDEI	CTNAG	4 cut(s)	114, 138, 162, 178
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	143, 183
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	185, 262
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	175, 275
CviAII	CATG	2 cut(s)	257, 265
CviJI	RGCY	8 cut(s)	22, 68, 113, 143, 183, 187, 230, 238
CviKI_1	RGCY	8 cut(s)	22, 68, 113, 143, 183, 187, 230, 238
CviQI	GTAC	2 cut(s)	175, 275
DdeI	CTNAG	4 cut(s)	114, 138, 162, 178
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	110
FaeI	CATG	2 cut(s)	260, 268
FaiI	YATR	4 cut(s)	72, 147, 258, 266
FatI	CATG	2 cut(s)	256, 264
FauI	CCCGC	1 cut(s)	103
FokI	GGATG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	143, 183
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	260, 268
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	139, 163
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	58, 145, 220
HpyCH4IV	ACGT	2 cut(s)	173, 273
HpyF3I	CTNAG	4 cut(s)	114, 138, 162, 178
HpySE526I	ACGT	2 cut(s)	173, 273
Hsp92II	CATG	2 cut(s)	260, 268
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	14, 165, 173, 197, 274
MaeII	ACGT	2 cut(s)	173, 273
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	73
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	5 cut(s)	56, 77, 122, 199, 280
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	133, 262
MspA1I	CMGCKG	1 cut(s)	187
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	260, 268
PceI	AGGCCT	1 cut(s)	143
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	2 cut(s)	176, 276
RsaNI	GTAC	2 cut(s)	175, 275
Sau3AI	GATC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	6 cut(s)	24, 33, 115, 176, 189, 276
Sse9I	AATT	5 cut(s)	56, 77, 122, 199, 280
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	176, 276
TasI	AATT	5 cut(s)	56, 77, 122, 199, 280
TspDTI	ATGAA	1 cut(s)	69
XapI	RAATTY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.