Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Reverse (-)

58649577 .. 58651817

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG399800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTGAAGTTTCTACTGGAGCATTTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGTCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCGCGGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGATCAACCAAGTAGTGATACATGAGCTAATTCATGTTTTTGATGATTGTCGGGCTGCTCCGATGGTGAACTGGGCTAATTGCCCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCATTGTAAACGTGAATTTTTGTTGTGCCAAGAAGATTCAAGAATTGTGAACAAGCTCAGTTCATTGATCAAGACCCTTTGCAACAGCAAGTGCAATTTTCATTCATCCATCAAATTTGCAGCAGCAAGTGCAATTTTCATTGATCAAGACCCTTTGCAGCAGCAAGTGCAATTTTCATTCATCCATCAAATTTGCAGCACCAAGTGCAATTTTCAGTTCAGGCTAGTTCATAGAGTATATGGCTTTTCAATTAAGAATAGGTATATTAATTTTAATTTGTTTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

192

Amino Acids

22.19

Weight (kDa)

8.39

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 104	2.3e-30	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	106, 109, 111
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	3 cut(s)	302, 401, 477
AdeI	CACNNNGTG	1 cut(s)	492
AgsI	TTSAA	2 cut(s)	327, 537
AluBI	AGCT	2 cut(s)	181, 343
AluI	AGCT	2 cut(s)	181, 343
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	6 cut(s)	209, 407, 410, 445, 448, 483
ApoI	RAATTY	3 cut(s)	302, 401, 477
AseI	ATTAAT	1 cut(s)	555
AsuHPI	GGTGA	3 cut(s)	16, 232, 293
BalI	TGGCCA	1 cut(s)	270
BbvI	GCAGC	6 cut(s)	196, 419, 422, 457, 460, 495
BccI	CCATC	5 cut(s)	108, 211, 279, 404, 480
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BclI	TGATCA	2 cut(s)	354, 430
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	7 cut(s)	109, 210, 408, 411, 446, 449, 484
BlsI	GCNGC	7 cut(s)	110, 211, 409, 412, 447, 450, 485
BmrI	ACTGGG	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	21, 230
Bse3DI	GCAATG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	3 cut(s)	119, 392, 468
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	358
BseNI	ACTGG	2 cut(s)	21, 230
BseXI	GCAGC	6 cut(s)	196, 419, 422, 457, 460, 495
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	93
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	156, 354, 430
BspACI	CCGC	3 cut(s)	106, 109, 111
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	21, 230
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	156, 354, 430
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
BstAPI	GCANNNNNTGC	3 cut(s)	416, 454, 492
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	275, 344
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	3 cut(s)	119, 392, 468
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	3 cut(s)	159, 357, 433
BstMBI	GATC	3 cut(s)	156, 354, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 454, 492
BstNSI	RCATGY	1 cut(s)	148
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	6 cut(s)	196, 419, 422, 457, 460, 495
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	119, 392, 468
Cac8I	GCNNGC	1 cut(s)	268
Cfr42I	CCGCGG	1 cut(s)	112
CviAII	CATG	5 cut(s)	139, 145, 176, 188, 245
CviJI	RGCY	7 cut(s)	181, 209, 230, 270, 343, 511, 531
CviKI_1	RGCY	7 cut(s)	181, 209, 230, 270, 343, 511, 531
DdeI	CTNAG	2 cut(s)	275, 344
DpnI	GATC	3 cut(s)	158, 356, 432
DpnII	GATC	3 cut(s)	156, 354, 430
DraIII	CACNNNGTG	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	268
FaeI	CATG	5 cut(s)	142, 148, 179, 191, 248
FatI	CATG	5 cut(s)	138, 144, 175, 187, 244
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	2 cut(s)	354, 430
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	7 cut(s)	109, 210, 408, 411, 446, 449, 484
FokI	GGATG	3 cut(s)	126, 379, 455
Fsp4HI	GCNGC	7 cut(s)	109, 210, 408, 411, 446, 449, 484
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	7 cut(s)	109, 210, 408, 411, 446, 449, 484
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	5 cut(s)	142, 148, 179, 191, 248
HinfI	GANTC	2 cut(s)	259, 323
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	16, 232, 293
Hpy166II	GTNNAC	4 cut(s)	100, 223, 296, 337
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	3 cut(s)	327, 358, 434
Hpy8I	GTNNAC	4 cut(s)	100, 223, 296, 337
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	9 cut(s)	148, 369, 381, 407, 419, 445, 457, 483, 495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 454, 492
HpyF3I	CTNAG	2 cut(s)	275, 344
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	5 cut(s)	142, 148, 179, 191, 248
Ksp22I	TGATCA	2 cut(s)	354, 430
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	156, 354, 430
LmnI	GCTCC	2 cut(s)	19, 217
LpnPI	CCDG	7 cut(s)	2, 21, 49, 106, 211, 252, 493
Lsp1109I	GCAGC	6 cut(s)	196, 419, 422, 457, 460, 495
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	298
MalI	GATC	3 cut(s)	158, 356, 432
MboI	GATC	3 cut(s)	156, 354, 430
MboII	GAAGA	3 cut(s)	94, 97, 332
MlsI	TGGCCA	1 cut(s)	270
MluNI	TGGCCA	1 cut(s)	270
MnlI	CCTC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	4 cut(s)	540, 555, 561, 577
MslI	CAYNNNNRTG	2 cut(s)	143, 276
Msp20I	TGGCCA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	416, 454, 492
NdeII	GATC	3 cut(s)	156, 354, 430
NlaIII	CATG	5 cut(s)	142, 148, 179, 191, 248
NspI	RCATGY	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	259, 323
PkrI	GCNGC	7 cut(s)	110, 211, 409, 412, 447, 450, 485
PshBI	ATTAAT	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	63
RseI	CAYNNNNRTG	2 cut(s)	143, 276
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	4 cut(s)	540, 555, 561, 577
SatI	GCNGC	7 cut(s)	109, 210, 408, 411, 446, 449, 484
Sau3AI	GATC	3 cut(s)	156, 354, 430
SetI	ASST	4 cut(s)	183, 301, 345, 551
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	143, 276
SsiI	CCGC	3 cut(s)	106, 109, 111
SspMI	CTAG	1 cut(s)	512
TaiI	ACGT	1 cut(s)	301
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	259, 323
Tru1I	TTAA	4 cut(s)	540, 555, 561, 577
Tru9I	TTAA	4 cut(s)	540, 555, 561, 577
TseI	GCWGC	6 cut(s)	209, 407, 410, 445, 448, 483
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	3 cut(s)	302, 401, 477
XceI	RCATGY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.