Rroxscaffold_1G00029610

UDP-glucose glycoprotein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
38202327 .. 38202668
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029610.1

Sequence Viewer

Length: 342 bp
ATGTTGGATCTCGAAGGATCCGAATCTCAAGCCGAAATGGGGAGCCGTGCGTTTTGTGGTATTATCATCTTGATGTGTTTGGTTGGCTCGGTTTCGGTTTCGGCTGCGAATCGGAGGCTCAAGATGTGCGGGGGAGCCGTTCGGGCCAAGTGGTTCCCTACTCCGGTGGCTTCTTTATTTGAATTCTCTCTTACATTGAGATCTGCATCCCCAAGATTGGTGCTTTACCGACAATTAGCTGAAGAATCTCTCTCATGTTTCCCACCGATTGATGAAACTAATTCAAGAAATGCCGGCGAAAAGGAGGAATTGAAGGACCACCAGCCACCGGTCGAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003980 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006011 GO:0006139 GO:0006457 GO:0006458 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006515 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009626 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009987 GO:0010033 GO:0010204 GO:0010243 GO:0010498 GO:0012501 GO:0012505 GO:0014070 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0023052 GO:0030163 GO:0030968 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0034620 GO:0034641 GO:0034645 GO:0034976 GO:0035251 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0042221 GO:0042440 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0046483 GO:0046527 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051603 GO:0051716 GO:0051788 GO:0055086 GO:0065007 GO:0070085 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0080134 GO:0097359 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.39

Weight (kDa)

5.41

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 340
AciI CCGC 1 cut(s) 129
AclWI GGATC 3 cut(s) 12, 15, 25
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 261
AfiI CCNNNNNNNGG 4 cut(s) 39, 163, 217, 328
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 3 cut(s) 182, 285, 313
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
AlwI GGATC 3 cut(s) 12, 15, 25
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 182
AsiGI ACCGGT 1 cut(s) 328
AspS9I GGNCC 2 cut(s) 144, 316
AvaII GGWCC 1 cut(s) 316
BamHI GGATCC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 91
BceAI ACGGC 2 cut(s) 30, 122
BglI GCCNNNNNGGC 1 cut(s) 143
BglII AGATCT 1 cut(s) 200
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 144, 316
BmiI GGNNCC 4 cut(s) 19, 44, 136, 155
BmsI GCATC 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 12, 104
BsaBI GATNNNNATC 2 cut(s) 22, 205
BsaWI WCCGGW 2 cut(s) 163, 328
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 163, 217, 328
Bse118I RCCGGY 2 cut(s) 293, 328
Bse8I GATNNNNATC 2 cut(s) 22, 205
BseGI GGATG 1 cut(s) 206
BseJI GATNNNNATC 2 cut(s) 22, 205
BseLI CCNNNNNNNGG 4 cut(s) 39, 163, 217, 328
BseXI GCAGC 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 1 cut(s) 146
BshTI ACCGGT 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 333
BsiSI CCGG 3 cut(s) 164, 294, 329
BslI CCNNNNNNNGG 4 cut(s) 39, 163, 217, 328
BsnI GGCC 1 cut(s) 146
Bsp143I GATC 3 cut(s) 7, 17, 200
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 4 cut(s) 19, 44, 136, 155
BspPI GGATC 3 cut(s) 12, 15, 25
BsrFI RCCGGY 2 cut(s) 293, 328
BssAI RCCGGY 2 cut(s) 293, 328
BssMI GATC 3 cut(s) 7, 17, 200
BstC8I GCNNGC 1 cut(s) 295
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 3 cut(s) 10, 20, 203
BstMBI GATC 3 cut(s) 7, 17, 200
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 3 cut(s) 7, 17, 200
BstYI RGATCY 3 cut(s) 7, 17, 200
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 295
Cfr10I RCCGGY 2 cut(s) 293, 328
Cfr13I GGNCC 2 cut(s) 144, 316
CspAI ACCGGT 1 cut(s) 328
CviAII CATG 1 cut(s) 255
DpnI GATC 3 cut(s) 9, 19, 202
DpnII GATC 3 cut(s) 7, 17, 200
Eco47I GGWCC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 182
FaeI CATG 1 cut(s) 258
FaiI YATR 2 cut(s) 256, 340
FatI CATG 1 cut(s) 254
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 146
HapII CCGG 3 cut(s) 164, 294, 329
Hin1II CATG 1 cut(s) 258
HinfI GANTC 3 cut(s) 23, 109, 245
HpaII CCGG 3 cut(s) 164, 294, 329
Hpy188I TCNGA 2 cut(s) 22, 114
Hpy188III TCNNGA 4 cut(s) 11, 70, 121, 285
HpyAV CCTTC 2 cut(s) 8, 307
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 258
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Kzo9I GATC 3 cut(s) 7, 17, 200
LmnI GCTCC 2 cut(s) 42, 134
LpnPI CCDG 3 cut(s) 177, 307, 335
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 215
MalI GATC 3 cut(s) 9, 19, 202
MboI GATC 3 cut(s) 7, 17, 200
MboII GAAGA 1 cut(s) 254
MflI RGATCY 3 cut(s) 7, 17, 200
MluCI AATT 4 cut(s) 182, 233, 280, 308
MnlI CCTC 2 cut(s) 108, 298
MroNI GCCGGC 1 cut(s) 293
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 3 cut(s) 164, 294, 329
MwoI GCNNNNNNNGC 1 cut(s) 143
NaeI GCCGGC 1 cut(s) 295
NdeII GATC 3 cut(s) 7, 17, 200
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 1 cut(s) 258
NlaIV GGNNCC 4 cut(s) 19, 44, 136, 155
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 3 cut(s) 23, 109, 245
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 1 cut(s) 106
PsiI TTATAA 1 cut(s) 340
PspN4I GGNNCC 4 cut(s) 19, 44, 136, 155
PspPI GGNCC 2 cut(s) 144, 316
PsuI RGATCY 3 cut(s) 7, 17, 200
RseI CAYNNNNRTG 1 cut(s) 71
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 7, 17, 200
Sau96I GGNCC 2 cut(s) 144, 316
SetI ASST 1 cut(s) 241
SfaNI GCATC 1 cut(s) 215
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 27, 119
SmoI CTYRAG 2 cut(s) 27, 119
Sse9I AATT 4 cut(s) 182, 233, 280, 308
SsiI CCGC 1 cut(s) 129
TaqI TCGA 2 cut(s) 12, 333
TasI AATT 4 cut(s) 182, 233, 280, 308
TfiI GAWTC 3 cut(s) 23, 109, 245
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.