Rroxscaffold_2G00093110

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000640
Physical Location & Seq
Forward (+)
14519364 .. 14527072
7709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093110.1

Sequence Viewer

Length: 936 bp
ATGCCCCATGATGACCCCTTCCTAATCACGCTCCAAATGGACCACTACATGATGTCCAGGGTGCTCATAGACACCGGGGCCTCGGTTAGCGTATTATTTTGCGATGCATACAAAGCTTTGAACGAGGAAGAGCCAAACCGTCACAAGATAACGAGCCCCTCATTAGTTTTTCGGGAGACATCCCAAGCTCTCTCCACCCCATCGGGTACCGGGAGGCTCACATCTTCTACCCCATCGGGTATCGGAGCCAAGCTCTCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGAAGCCAATCTCTCTCCACCCCATCGGGTACCGGAGGCTCACGCCTTCTACCCCATCGGGTATCGAAGCCAATCTCTCTCCACCCCATCGGGTACGGAGGCTCACATCTTCTACCCCATCGGGTATCGAAGCCAATCTCTCTCCACCCCATCGGGTATCGAGCCAAGCTCTCTCCACCCCATTGGTACCGGAGGCTCACATCTTCTACCCCATCGGTATCGAAGCCAATCTCTCTCCACCCCATCGGGTACCGAAGGCTCACATCTTCTACCCTATCGGGTATCGAAGCCAATCTCTCTCCACCCCATCGGGTACCGGAGGCTCACGCCTCTACCCCATCGGGCATCGAAGCCAATCTCTCTTCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGAAGCCAATCTCTCTTCACCCCATTGTGTACCGAGGCTCACATCTTCTACCCCATCGGCATCGGAGCCAAGCTCTTTCCACCTCATTGGGTACCGGAGGCTCAAAATTCTCCATCCCACCAATCCTGGGGCAACCTCATTGCCCCACGAAAGTGGCTTACCTACGCCGTAGCCCGCTCAAGATTTCTCTTCCGAGGGCACTTGGGGGACTACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

311

Amino Acids

34.3

Weight (kDa)

9.92

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 8 cut(s) 206, 271, 335, 492, 555, 619, 682, 808
AccB1I GGYRCC 8 cut(s) 206, 271, 335, 492, 555, 619, 682, 808
AccBSI CCGCTC 1 cut(s) 894
AciI CCGC 1 cut(s) 892
AcsI RAATTY 1 cut(s) 823
AfiI CCNNNNNNNGG 1 cut(s) 844
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 2 cut(s) 56, 842
AleI CACNNNNGTG 1 cut(s) 868
AluBI AGCT 5 cut(s) 116, 188, 253, 475, 790
AluI AGCT 5 cut(s) 116, 188, 253, 475, 790
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 170
AoxI GGCC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 823
Asp718I GGTACC 8 cut(s) 206, 271, 335, 492, 555, 619, 682, 808
AspS9I GGNCC 2 cut(s) 40, 78
AsuC2I CCSGG 2 cut(s) 76, 211
AsuHPI GGTGA 2 cut(s) 663, 727
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 918
BanI GGYRCC 8 cut(s) 206, 271, 335, 492, 555, 619, 682, 808
BanII GRGCYC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 66
BceAI ACGGC 1 cut(s) 869
BciT130I CCWGG 2 cut(s) 58, 844
BcnI CCSGG 2 cut(s) 76, 211
BcoDI GTCTC 1 cut(s) 170
Bme1390I CCNGG 4 cut(s) 58, 76, 211, 844
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 40, 78
BmrFI CCNGG 4 cut(s) 58, 76, 211, 844
BmsI GCATC 3 cut(s) 94, 660, 786
BplI GAGNNNNNCTC 6 cut(s) 237, 269, 459, 491, 774, 806
BpuEI CTTGAG 1 cut(s) 880
BpuMI CCSGG 2 cut(s) 76, 211
BsaJI CCNNGG 6 cut(s) 57, 75, 81, 750, 843, 910
BsaWI WCCGGW 6 cut(s) 274, 338, 495, 622, 685, 811
Bsc4I CCNNNNNNNGG 1 cut(s) 844
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 2 cut(s) 58, 844
BseDI CCNNGG 6 cut(s) 57, 75, 81, 750, 843, 910
BseGI GGATG 2 cut(s) 179, 830
BseLI CCNNNNNNNGG 1 cut(s) 844
BseMI GCAATG 1 cut(s) 855
BseSI GKGCMC 1 cut(s) 918
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 8 cut(s) 206, 271, 335, 492, 555, 619, 682, 808
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 8 cut(s) 75, 210, 275, 339, 496, 623, 686, 812
BslI CCNNNNNNNGG 1 cut(s) 844
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 3 cut(s) 66, 158, 918
BspACI CCGC 1 cut(s) 892
BspANI GGCC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 123
BspT107I GGYRCC 8 cut(s) 206, 271, 335, 492, 555, 619, 682, 808
BsrBI CCGCTC 1 cut(s) 894
BsrDI GCAATG 1 cut(s) 855
BssECI CCNNGG 6 cut(s) 57, 75, 81, 750, 843, 910
Bst2UI CCWGG 2 cut(s) 58, 844
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 4 cut(s) 123, 673, 737, 911
BstC8I GCNNGC 1 cut(s) 892
BstF5I GGATG 2 cut(s) 179, 830
BstMAI GTCTC 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 2 cut(s) 58, 844
BstSCI CCNGG 4 cut(s) 56, 74, 209, 842
BstSLI GKGCMC 1 cut(s) 918
BstXI CCANNNNNNTGG 3 cut(s) 489, 804, 870
BsuRI GGCC 1 cut(s) 80
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 179, 830
Cac8I GCNNGC 1 cut(s) 892
Cfr13I GGNCC 2 cut(s) 40, 78
CviAII CATG 2 cut(s) 8, 49
Eam1104I CTCTTC 4 cut(s) 123, 673, 737, 911
EarI CTCTTC 4 cut(s) 123, 673, 737, 911
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 56, 842
EcoT22I ATGCAT 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 2 cut(s) 11, 52
FaiI YATR 5 cut(s) 9, 50, 68, 109, 934
FatI CATG 2 cut(s) 7, 48
FauI CCCGC 1 cut(s) 899
FokI GGATG 2 cut(s) 166, 817
FriOI GRGCYC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 80
HapII CCGG 8 cut(s) 75, 210, 275, 339, 496, 623, 686, 812
Hin1II CATG 2 cut(s) 11, 52
HindIII AAGCTT 1 cut(s) 114
HpaII CCGG 8 cut(s) 75, 210, 275, 339, 496, 623, 686, 812
HphI GGTGA 2 cut(s) 663, 727
Hpy166II GTNNAC 1 cut(s) 747
Hpy188I TCNGA 3 cut(s) 245, 782, 911
Hpy188III TCNNGA 2 cut(s) 173, 897
Hpy8I GTNNAC 1 cut(s) 747
HpyAV CCTTC 3 cut(s) 28, 362, 555
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 11, 52
KpnI GGTACC 8 cut(s) 210, 275, 339, 496, 559, 623, 686, 812
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 3 cut(s) 36, 245, 782
LweI GCATC 3 cut(s) 94, 660, 786
MaeIII GTNAC 1 cut(s) 140
MbiI CCGCTC 1 cut(s) 894
MhlI GDGCHC 3 cut(s) 66, 158, 918
MluCI AATT 1 cut(s) 823
Mph1103I ATGCAT 1 cut(s) 109
MslI CAYNNNNRTG 1 cut(s) 868
MspI CCGG 8 cut(s) 75, 210, 275, 339, 496, 623, 686, 812
MspR9I CCNGG 4 cut(s) 58, 76, 211, 844
MvaI CCWGG 2 cut(s) 58, 844
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 2 cut(s) 76, 211
NlaIII CATG 2 cut(s) 11, 52
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 868
PciSI GCTCTTC 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 56, 842
PspGI CCWGG 2 cut(s) 56, 842
PspPI GGNCC 2 cut(s) 40, 78
RseI CAYNNNNRTG 1 cut(s) 868
SapI GCTCTTC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 40, 78
ScrFI CCNGG 4 cut(s) 58, 76, 211, 844
SduI GDGCHC 3 cut(s) 66, 158, 918
SetI ASST 9 cut(s) 118, 190, 255, 477, 792, 802, 855, 881, 933
SfaNI GCATC 3 cut(s) 94, 660, 786
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 868
SmlI CTYRAG 1 cut(s) 895
SmoI CTYRAG 1 cut(s) 895
Sse9I AATT 1 cut(s) 823
SsiI CCGC 1 cut(s) 892
StyD4I CCNGG 4 cut(s) 56, 74, 209, 842
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 8 cut(s) 307, 371, 434, 466, 527, 591, 654, 718
TasI AATT 1 cut(s) 823
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 823
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.