Rroxscaffold_2G00087130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000640
Physical Location & Seq
Reverse (-)
9232768 .. 9244002
11235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087130.1

Sequence Viewer

Length: 837 bp
ATGCTCATGCTACCGCCAGCGGTGCCAACTCCCGCCAAAGGAGTGACCTATGGGAACACGGCCAAGCGAGGCTACCGCCTCACCCCCCCTTACCCCCGGATCACCGCCGATGCGCCACCACACTCCTCGCCAAGACAGCATCGAAGCTCCAGGCGGGGACTAAAGCATATTAGTCCCACATCGAAAACATGGAGAAGATCAGCTCCCTCCTCACCTATTAAAGACATAGCACAACCACCTTTAAGAGGTAATAACTCCTTGATTCACCGTTCACCGCATATTCTTATATATGAGTTCTCACTCGAGCATCGGAGAGGTATAGACCGTCCCCAATCCCTCTCCACCCCATCGGGTACGGGAGACTCACAACATCTCCATCCCACCAATCCCGGGGCAACTTCATTGTCCCACGACGGGGCTTACATACGGCGTCGCCCGCTCAAGATTTCTCTCTCGAGGGCACTTGGGGGACTACCTATGGGCACACTAGTGCCAAACCTTGAGATCAAAACAAATAAGTCCCCACCCAAGAAACATCTTGAACGGGAACTTGGGGGACTTGTACATACTAGGGAGTCTCAACTAGGTTTACCACTAGCCCCCGAGCCCATCGGTACTCCCGGTACTACGCCATGGGCACGGTTCCGCCGCCATGGCGGACGTCACATTAGATACCACCCCGGCACCCGTGGCCCGGGCAAAGCTAGCTGTCCATCTACCTCTACAAATACGGGACGGATGACATCGAAGGGACTCGTGTCCCACATCAAGGATCGGGGACAATCCCTTCCCACGCTTGAATATAAAAGACATAGCACAACCACCTTTAAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

30.58

Weight (kDa)

11.53

Isoelectric Point (pI)

64.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 664
AccB1I GGYRCC 2 cut(s) 22, 683
AccBSI CCGCTC 1 cut(s) 439
AclWI GGATC 2 cut(s) 107, 780
AcoI YGGCCR 1 cut(s) 60
AcyI GRCGYC 2 cut(s) 430, 661
AfaI GTAC 4 cut(s) 355, 564, 616, 625
AfiI CCNNNNNNNGG 8 cut(s) 38, 245, 390, 414, 415, 694, 769, 831
AgsI TTSAA 2 cut(s) 542, 800
AhlI ACTAGT 1 cut(s) 487
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 4 cut(s) 147, 203, 704, 708
AluI AGCT 4 cut(s) 147, 203, 704, 708
Alw26I GTCTC 2 cut(s) 354, 582
AlwI GGATC 2 cut(s) 107, 780
Ama87I CYCGRG 5 cut(s) 302, 389, 454, 602, 694
AoxI GGCC 2 cut(s) 60, 691
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 692
AsuC2I CCSGG 7 cut(s) 97, 390, 391, 621, 681, 695, 696
AsuHPI GGTGA 5 cut(s) 73, 94, 204, 257, 264
AsuNHI GCTAGC 1 cut(s) 704
AvaI CYCGRG 5 cut(s) 302, 389, 454, 602, 694
BaeGI GKGCMC 3 cut(s) 463, 485, 640
BanI GGYRCC 2 cut(s) 22, 683
BanII GRGCYC 1 cut(s) 609
BauI CACGAG 1 cut(s) 755
BccI CCATC 4 cut(s) 355, 384, 617, 721
BceAI ACGGC 2 cut(s) 75, 443
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 7 cut(s) 97, 390, 391, 621, 681, 695, 696
BcoDI GTCTC 2 cut(s) 354, 582
BcuI ACTAGT 1 cut(s) 487
BfaI CTAG 5 cut(s) 488, 570, 584, 596, 705
BglI GCCNNNNNGGC 1 cut(s) 654
BisI GCNGC 1 cut(s) 649
BlsI GCNGC 1 cut(s) 650
Bme1390I CCNGG 8 cut(s) 97, 151, 390, 391, 621, 681, 695, 696
BmeT110I CYCGRG 5 cut(s) 302, 389, 454, 602, 694
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 3 cut(s) 24, 644, 685
BmrFI CCNGG 8 cut(s) 97, 151, 390, 391, 621, 681, 695, 696
BmsI GCATC 3 cut(s) 100, 148, 316
BmtI GCTAGC 1 cut(s) 708
BoxI GACNNNNGTC 1 cut(s) 757
BpmI CTGGAG 1 cut(s) 133
BpuEI CTTGAG 2 cut(s) 425, 521
BpuMI CCSGG 7 cut(s) 97, 390, 391, 621, 681, 695, 696
BsaHI GRCGYC 2 cut(s) 430, 661
BsaJI CCNNGG 8 cut(s) 95, 389, 390, 632, 652, 679, 688, 694
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 8 cut(s) 38, 245, 390, 414, 415, 694, 769, 831
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 8 cut(s) 95, 389, 390, 632, 652, 679, 688, 694
BseGI GGATG 2 cut(s) 376, 744
BseLI CCNNNNNNNGG 8 cut(s) 38, 245, 390, 414, 415, 694, 769, 831
BseRI GAGGAG 2 cut(s) 115, 199
BseSI GKGCMC 3 cut(s) 463, 485, 640
BshFI GGCC 2 cut(s) 62, 693
BshNI GGYRCC 2 cut(s) 22, 683
BsiHKCI CYCGRG 5 cut(s) 302, 389, 454, 602, 694
BsiSI CCGG 5 cut(s) 97, 390, 621, 681, 695
BslI CCNNNNNNNGG 8 cut(s) 38, 245, 390, 414, 415, 694, 769, 831
BsmAI GTCTC 2 cut(s) 354, 582
BsnI GGCC 2 cut(s) 62, 693
BsoBI CYCGRG 5 cut(s) 302, 389, 454, 602, 694
Bsp1286I GDGCHC 4 cut(s) 463, 485, 609, 640
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 4 cut(s) 99, 197, 504, 772
Bsp19I CCATGG 2 cut(s) 632, 652
BspANI GGCC 2 cut(s) 62, 693
BspLI GGNNCC 3 cut(s) 24, 644, 685
BspOI GCTAGC 1 cut(s) 708
BspPI GGATC 2 cut(s) 107, 780
BspT107I GGYRCC 2 cut(s) 22, 683
BsrBI CCGCTC 1 cut(s) 439
BsrGI TGTACA 1 cut(s) 562
BssECI CCNNGG 8 cut(s) 95, 389, 390, 632, 652, 679, 688, 694
BssMI GATC 4 cut(s) 99, 197, 504, 772
BssNI GRCGYC 2 cut(s) 430, 661
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 2 cut(s) 632, 652
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 3 cut(s) 269, 326, 642
BstACI GRCGYC 2 cut(s) 430, 661
BstAUI TGTACA 1 cut(s) 562
BstC8I GCNNGC 3 cut(s) 18, 437, 706
BstDSI CCRYGG 3 cut(s) 632, 652, 688
BstENI CCTNNNNNAGG 2 cut(s) 243, 829
BstF5I GGATG 2 cut(s) 376, 744
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 4 cut(s) 102, 200, 507, 775
BstMAI GTCTC 2 cut(s) 354, 582
BstMBI GATC 4 cut(s) 99, 197, 504, 772
BstMWI GCNNNNNNNGC 6 cut(s) 22, 136, 436, 654, 690, 705
BstNI CCWGG 1 cut(s) 151
BstPAI GACNNNNGTC 1 cut(s) 757
BstSCI CCNGG 8 cut(s) 95, 149, 388, 389, 619, 679, 693, 694
BstSLI GKGCMC 3 cut(s) 463, 485, 640
BsuRI GGCC 2 cut(s) 62, 693
BtgI CCRYGG 3 cut(s) 632, 652, 688
BtsCI GGATG 2 cut(s) 376, 744
Cac8I GCNNGC 3 cut(s) 18, 437, 706
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 692
Cfr9I CCCGGG 2 cut(s) 389, 694
CseI GACGC 1 cut(s) 419
Csp6I GTAC 4 cut(s) 354, 563, 615, 624
CviAII CATG 4 cut(s) 7, 189, 633, 653
CviQI GTAC 4 cut(s) 354, 563, 615, 624
DpnI GATC 4 cut(s) 101, 199, 506, 774
DpnII GATC 4 cut(s) 99, 197, 504, 772
EaeI YGGCCR 1 cut(s) 60
EciI GGCGGA 2 cut(s) 635, 672
Eco130I CCWWGG 2 cut(s) 632, 652
Eco24I GRGCYC 1 cut(s) 609
Eco88I CYCGRG 5 cut(s) 302, 389, 454, 602, 694
EcoNI CCTNNNNNAGG 2 cut(s) 243, 829
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 2 cut(s) 632, 652
EcoT38I GRGCYC 1 cut(s) 609
ErhI CCWWGG 2 cut(s) 632, 652
FaeI CATG 4 cut(s) 10, 192, 636, 656
FatI CATG 4 cut(s) 6, 188, 632, 652
FauI CCCGC 3 cut(s) 40, 147, 444
Fnu4HI GCNGC 1 cut(s) 649
FokI GGATG 2 cut(s) 363, 751
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 1 cut(s) 649
FspBI CTAG 5 cut(s) 488, 570, 584, 596, 705
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 649
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 2 cut(s) 62, 693
HapII CCGG 5 cut(s) 97, 390, 621, 681, 695
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 2 cut(s) 430, 661
Hin1II CATG 4 cut(s) 10, 192, 636, 656
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 4 cut(s) 262, 362, 575, 753
HpaII CCGG 5 cut(s) 97, 390, 621, 681, 695
HphI GGTGA 5 cut(s) 73, 94, 204, 257, 264
Hpy166II GTNNAC 2 cut(s) 272, 590
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 3 cut(s) 442, 454, 539
Hpy8I GTNNAC 2 cut(s) 272, 590
Hpy99I CGWCG 2 cut(s) 416, 435
HpyAV CCTTC 2 cut(s) 742, 797
HpyCH4III ACNGT 3 cut(s) 269, 326, 642
HpyCH4IV ACGT 1 cut(s) 661
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 136, 436, 654, 690, 705
HpySE526I ACGT 1 cut(s) 661
Hsp92I GRCGYC 2 cut(s) 430, 661
Hsp92II CATG 4 cut(s) 10, 192, 636, 656
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 4 cut(s) 99, 197, 504, 772
LmnI GCTCC 2 cut(s) 152, 208
LpnPI CCDG 8 cut(s) 30, 110, 136, 163, 403, 634, 694, 708
LweI GCATC 3 cut(s) 100, 148, 316
MaeI CTAG 5 cut(s) 488, 570, 584, 596, 705
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 2 cut(s) 43, 662
MalI GATC 4 cut(s) 101, 199, 506, 774
MbiI CCGCTC 1 cut(s) 439
MboI GATC 4 cut(s) 99, 197, 504, 772
MboII GAAGA 1 cut(s) 207
MhlI GDGCHC 4 cut(s) 463, 485, 609, 640
MlyI GAGTC 3 cut(s) 356, 584, 747
MseI TTAA 3 cut(s) 219, 242, 828
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 5 cut(s) 97, 390, 621, 681, 695
MspR9I CCNGG 8 cut(s) 97, 151, 390, 391, 621, 681, 695, 696
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 6 cut(s) 22, 136, 436, 654, 690, 705
NciI CCSGG 7 cut(s) 97, 390, 391, 621, 681, 695, 696
NcoI CCATGG 2 cut(s) 632, 652
NdeII GATC 4 cut(s) 99, 197, 504, 772
NheI GCTAGC 1 cut(s) 704
NlaIII CATG 4 cut(s) 10, 192, 636, 656
NlaIV GGNNCC 3 cut(s) 24, 644, 685
NmuCI GTSAC 2 cut(s) 43, 662
OliI CACNNNNGTG 1 cut(s) 488
PaeR7I CTCGAG 2 cut(s) 302, 454
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 650
PleI GAGTC 3 cut(s) 356, 583, 747
PpsI GAGTC 3 cut(s) 356, 583, 747
PshAI GACNNNNGTC 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 24, 644, 685
PspPI GGNCC 1 cut(s) 692
PspXI VCTCGAGB 1 cut(s) 302
RsaI GTAC 4 cut(s) 355, 564, 616, 625
RsaNI GTAC 4 cut(s) 354, 563, 615, 624
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 3 cut(s) 219, 242, 828
SatI GCNGC 1 cut(s) 649
Sau3AI GATC 4 cut(s) 99, 197, 504, 772
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 3 cut(s) 356, 584, 747
ScrFI CCNGG 8 cut(s) 97, 151, 390, 391, 621, 681, 695, 696
SduI GDGCHC 4 cut(s) 463, 485, 609, 640
SfaNI GCATC 3 cut(s) 100, 148, 316
Sfr274I CTCGAG 2 cut(s) 302, 454
SlaI CTCGAG 2 cut(s) 302, 454
SmaI CCCGGG 2 cut(s) 391, 696
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 4 cut(s) 302, 440, 454, 500
SmoI CTYRAG 4 cut(s) 302, 440, 454, 500
SpeI ACTAGT 1 cut(s) 487
SrfI GCCCGGGC 1 cut(s) 696
SspMI CTAG 5 cut(s) 488, 570, 584, 596, 705
StyD4I CCNGG 8 cut(s) 95, 149, 388, 389, 619, 679, 693, 694
StyI CCWWGG 2 cut(s) 632, 652
TaaI ACNGT 3 cut(s) 269, 326, 642
TaiI ACGT 1 cut(s) 664
TaqI TCGA 5 cut(s) 142, 182, 303, 455, 746
TatI WGTACW 1 cut(s) 562
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 3 cut(s) 219, 242, 828
Tru9I TTAA 3 cut(s) 219, 242, 828
TseFI GTSAC 2 cut(s) 43, 662
Tsp45I GTSAC 2 cut(s) 43, 662
TspDTI ATGAA 1 cut(s) 390
TspGWI ACGGA 1 cut(s) 751
TspMI CCCGGG 2 cut(s) 389, 694
XagI CCTNNNNNAGG 2 cut(s) 243, 829
XhoI CTCGAG 2 cut(s) 302, 454
XmaI CCCGGG 2 cut(s) 389, 694
XspI CTAG 5 cut(s) 488, 570, 584, 596, 705
ZraI GACGTC 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.