Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000923.1

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Reverse (-)

30096 .. 34467

Gene Structure 4372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000923.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgaacaaggtagtagatccaaaatccatgcagatcccccactatcgattttggatctgctccgatggtgaagtttctgctggagcatctggagaaatcgattttcgatctgctccgacgtttatgctggagcatctggagaaatctgggtgtgggatattagacgggtcttgctgggccgttcattgcgagaagaagattgccggagtatacacccgccgcggatggataatggtgtgtagtaatcacatgaacatgcaagatgaggtcaaccaagtagtgatacatgagctaattcatgctggaacagattccaacattgttgtccggtatgtcacaatattggctccagctgactcgggaacaccgatggaattgatccagattcaagctctaatgtctgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

135

Amino Acids

14.94

Weight (kDa)

5.58

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	217, 220, 222
AclWI	GGATC	4 cut(s)	11, 28, 62, 373
AgsI	TTSAA	1 cut(s)	389
AluBI	AGCT	3 cut(s)	292, 353, 392
AluI	AGCT	3 cut(s)	292, 353, 392
AlwI	GGATC	4 cut(s)	11, 28, 62, 373
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	358
BccI	CCATC	3 cut(s)	59, 219, 364
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	348
BmsI	GCATC	2 cut(s)	95, 142
BpmI	CTGGAG	5 cut(s)	102, 111, 149, 158, 333
Bsa29I	ATCGAT	2 cut(s)	46, 99
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	184
BseCI	ATCGAT	2 cut(s)	46, 99
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	179
BshVI	ATCGAT	2 cut(s)	46, 99
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	204, 328
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	358
Bsp143I	GATC	5 cut(s)	16, 33, 54, 107, 378
BspACI	CCGC	3 cut(s)	217, 220, 222
BspANI	GGCC	1 cut(s)	179
BspDI	ATCGAT	2 cut(s)	46, 99
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	4 cut(s)	11, 28, 62, 373
BsrDI	GCAATG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	5 cut(s)	16, 33, 54, 107, 378
BssNAI	GTATAC	1 cut(s)	211
Bst1107I	GTATAC	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	230
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	5 cut(s)	19, 36, 57, 110, 381
BstMBI	GATC	5 cut(s)	16, 33, 54, 107, 378
BstNSI	RCATGY	1 cut(s)	259
BstUI	CGCG	1 cut(s)	222
BstX2I	RGATCY	3 cut(s)	16, 33, 54
BstYI	RGATCY	3 cut(s)	16, 33, 54
BstZ17I	GTATAC	1 cut(s)	211
Bsu15I	ATCGAT	2 cut(s)	46, 99
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	2 cut(s)	46, 99
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	177
Cfr42I	CCGCGG	1 cut(s)	223
ClaI	ATCGAT	2 cut(s)	46, 99
CviAII	CATG	5 cut(s)	28, 250, 256, 287, 299
CviJI	RGCY	5 cut(s)	179, 292, 347, 353, 392
CviKI_1	RGCY	5 cut(s)	179, 292, 347, 353, 392
DpnI	GATC	5 cut(s)	18, 35, 56, 109, 380
DpnII	GATC	5 cut(s)	16, 33, 54, 107, 378
Eco88I	CYCGRG	1 cut(s)	358
FaeI	CATG	5 cut(s)	31, 253, 259, 290, 302
FaiI	YATR	9 cut(s)	29, 125, 211, 251, 257, 288, 300, 333, 406
FatI	CATG	5 cut(s)	27, 249, 255, 286, 298
FauI	CCCGC	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	5 cut(s)	102, 111, 149, 158, 333
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	2 cut(s)	204, 328
Hin1II	CATG	5 cut(s)	31, 253, 259, 290, 302
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	3 cut(s)	311, 356, 385
HpaII	CCGG	2 cut(s)	204, 328
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	211, 271
Hpy188I	TCNGA	2 cut(s)	64, 117
Hpy188III	TCNNGA	4 cut(s)	90, 137, 360, 382
Hpy8I	GTNNAC	2 cut(s)	211, 271
Hpy99I	CGWCG	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	31, 259, 404
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	5 cut(s)	31, 253, 259, 290, 302
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	16, 33, 54, 107, 378
LmnI	GCTCC	5 cut(s)	65, 83, 118, 130, 352
LweI	GCATC	2 cut(s)	95, 142
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	5 cut(s)	18, 35, 56, 109, 380
MboI	GATC	5 cut(s)	16, 33, 54, 107, 378
MboII	GAAGA	2 cut(s)	205, 208
MflI	RGATCY	3 cut(s)	16, 33, 54
MluCI	AATT	2 cut(s)	294, 374
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	140, 339
MnlI	CCTC	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	222, 353
MspI	CCGG	2 cut(s)	204, 328
MvnI	CGCG	1 cut(s)	222
NdeII	GATC	5 cut(s)	16, 33, 54, 107, 378
NlaIII	CATG	5 cut(s)	31, 253, 259, 290, 302
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	311, 385
PkrI	GCNGC	1 cut(s)	221
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	177
PsuI	RGATCY	3 cut(s)	16, 33, 54
PvuII	CAGCTG	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	254
SacII	CCGCGG	1 cut(s)	223
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	5 cut(s)	16, 33, 54, 107, 378
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	350
SetI	ASST	6 cut(s)	12, 122, 270, 294, 355, 394
SfaNI	GCATC	2 cut(s)	95, 142
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	294, 374
SsiI	CCGC	3 cut(s)	217, 220, 222
SspI	AATATT	1 cut(s)	342
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	3 cut(s)	46, 99, 106
TasI	AATT	2 cut(s)	294, 374
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	311, 385
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	17, 173, 266, 287
XceI	RCATGY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.