Rw5G049380

Mitochondrial inner membrane protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000640
Physical Location & Seq
Reverse (-)
85611246 .. 85618906
7661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G049380.1

Sequence Viewer

Length: 468 bp
ATGGCTACTTCAACTTCACCTATTGAGGAACAGCAAATAGCAGAGCTTGGAACTAAGGTGGATAAGATCCAAGGAGCATATTACTGGATTATGCAAGCTTCTCAACCAGAACAACACCCAATTGTTGTGGGGATGATAAAGTGGCGTCGACAAGTGGGAGTGATTCGAGGTGGGTTGATGGGAGTGAAGTGGAAACTGATATTGTTCCTTCTGATAATGGAGGCAGAGATTGAGGGTGAAGTTTCGGCTGGAGCATCAGTCTTAATCGAGTTTGGATCTGCTCCGATGGTGAAGTTTCTGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCAAGAAGAAGATTGCCGGAGTATACACCCACCGCGGATGGATAAGTTGCCAGATTGATGCGGAGACAATGAGTTTGGGTACAAGTACAATGGCCAGCAGTGACTAA

Protein Analysis

155

Amino Acids

16.97

Weight (kDa)

6.08

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 148, 384
AccII CGCG 1 cut(s) 396
AciI CCGC 3 cut(s) 394, 396, 422
AclWI GGATC 2 cut(s) 61, 283
AcoI YGGCCR 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 2 cut(s) 442, 448
AgsI TTSAA 1 cut(s) 12
AluBI AGCT 2 cut(s) 46, 98
AluI AGCT 2 cut(s) 46, 98
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 2 cut(s) 61, 283
AoxI GGCC 2 cut(s) 351, 453
ArsI GACNNNNNNTTYG 2 cut(s) 418, 450
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 3 cut(s) 9, 248, 301
BalI TGGCCA 1 cut(s) 455
BccI CCATC 3 cut(s) 172, 280, 393
BceAI ACGGC 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 351
BmsI GCATC 3 cut(s) 263, 316, 409
BpmI CTGGAG 3 cut(s) 270, 323, 332
BsaHI GRCGYC 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 70, 394
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 358
BseDI CCNNGG 2 cut(s) 70, 394
BseGI GGATG 2 cut(s) 138, 404
BseMI GCAATG 1 cut(s) 358
BseNI ACTGG 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 348
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 2 cut(s) 353, 455
BsiSI CCGG 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 419
BsnI GGCC 2 cut(s) 353, 455
Bsp143I GATC 2 cut(s) 66, 275
BspACI CCGC 3 cut(s) 394, 396, 422
BspANI GGCC 2 cut(s) 353, 455
BspFNI CGCG 1 cut(s) 396
BspPI GGATC 2 cut(s) 61, 283
BsrDI GCAATG 1 cut(s) 358
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 70, 394
BssMI GATC 2 cut(s) 66, 275
BssNAI GTATAC 1 cut(s) 385
BssNI GRCGYC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 70
Bst1107I GTATAC 1 cut(s) 385
BstACI GRCGYC 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 96, 457
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 2 cut(s) 138, 404
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 2 cut(s) 69, 278
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 2 cut(s) 66, 275
BstUI CGCG 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 66, 275
BstYI RGATCY 2 cut(s) 66, 275
BstZ17I GTATAC 1 cut(s) 385
BsuRI GGCC 2 cut(s) 353, 455
BtgI CCRYGG 1 cut(s) 394
BtsCI GGATG 2 cut(s) 138, 404
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 96, 457
Cfr13I GGNCC 1 cut(s) 351
Cfr42I CCGCGG 1 cut(s) 397
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 441, 447
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviJI RGCY 6 cut(s) 5, 46, 98, 248, 353, 455
CviKI_1 RGCY 6 cut(s) 5, 46, 98, 248, 353, 455
CviQI GTAC 2 cut(s) 441, 447
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 68, 277
DpnII GATC 2 cut(s) 66, 275
EaeI YGGCCR 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaiI YATR 3 cut(s) 79, 92, 385
FblI GTMKAC 2 cut(s) 148, 384
FokI GGATG 2 cut(s) 145, 411
GsaI CCCAGC 1 cut(s) 352
GsuI CTGGAG 3 cut(s) 270, 323, 332
HaeIII GGCC 2 cut(s) 353, 455
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 378
HphI GGTGA 3 cut(s) 9, 248, 301
Hpy166II GTNNAC 2 cut(s) 149, 385
Hpy188I TCNGA 2 cut(s) 213, 285
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 2 cut(s) 149, 385
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 94, 363
HpyF3I CTNAG 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 145
KspI CCGCGG 1 cut(s) 397
Kzo9I GATC 2 cut(s) 66, 275
LmnI GCTCC 4 cut(s) 74, 251, 286, 304
LpnPI CCDG 9 cut(s) 70, 120, 234, 287, 296, 306, 334, 391, 425
LweI GCATC 3 cut(s) 263, 316, 409
MaeIII GTNAC 1 cut(s) 461
MalI GATC 2 cut(s) 68, 277
MboI GATC 2 cut(s) 66, 275
MboII GAAGA 2 cut(s) 379, 382
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 2 cut(s) 66, 275
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 1 cut(s) 120
MluNI TGGCCA 1 cut(s) 455
MnlI CCTC 4 cut(s) 19, 161, 214, 226
Mox20I TGGCCA 1 cut(s) 455
MscI TGGCCA 1 cut(s) 455
MseI TTAA 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 1 cut(s) 378
MunI CAATTG 1 cut(s) 120
MvnI CGCG 1 cut(s) 396
NdeII GATC 2 cut(s) 66, 275
NmuCI GTSAC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 351
PsuI RGATCY 2 cut(s) 66, 275
RsaI GTAC 2 cut(s) 442, 448
RsaNI GTAC 2 cut(s) 441, 447
SacII CCGCGG 1 cut(s) 397
SalI GTCGAC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 263
Sau3AI GATC 2 cut(s) 66, 275
Sau96I GGNCC 1 cut(s) 351
SetI ASST 5 cut(s) 22, 48, 60, 100, 172
SfaNI GCATC 3 cut(s) 263, 316, 409
Sfr303I CCGCGG 1 cut(s) 397
SgrBI CCGCGG 1 cut(s) 397
Sse9I AATT 1 cut(s) 120
SsiI CCGC 3 cut(s) 394, 396, 422
StyI CCWWGG 1 cut(s) 70
TaqI TCGA 3 cut(s) 148, 166, 267
TasI AATT 1 cut(s) 120
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 461
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 1 cut(s) 466
XmiI GTMKAC 2 cut(s) 148, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.