Rmu_sc0006850.1_g000014

Mitochondrial inner membrane protease

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006850.1
Physical Location & Seq
Forward (+)
48235 .. 48739
505 bp
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UTR
Exon/CDS
Intron
Rmu_sc0006850.1_g000014.1.cds

Sequence Viewer

Length: 219 bp
atggtgaagtttatgctggagcatctggagaaatctgggtgtgggatattagacgggtcttgctgggccgttcattgcgagaagaagattgccggagtatacacccgccgcggatggataatggtgtgtagtaatcacatgaacatgcaagatgaggtcaaccaagtagtgatacatgagctaattcatgctggaacacattcgtgctggccatcttag

Protein Analysis

72

Amino Acids

8.18

Weight (kDa)

6.56

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 106, 109, 111
AcoI YGGCCR 1 cut(s) 209
AleI CACNNNNGTG 1 cut(s) 202
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
AoxI GGCC 2 cut(s) 66, 209
Asp700I GAANNNNTTC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 16
BalI TGGCCA 1 cut(s) 211
BccI CCATC 1 cut(s) 108
BceAI ACGGC 1 cut(s) 53
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 66
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 38, 47
BsaJI CCNNGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 68, 211
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 2 cut(s) 68, 211
BspACI CCGC 3 cut(s) 106, 109, 111
BspANI GGCC 2 cut(s) 68, 211
BspFNI CGCG 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 109
BssNAI GTATAC 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 148
BstUI CGCG 1 cut(s) 111
BstZ17I GTATAC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 68, 211
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 66
Cfr42I CCGCGG 1 cut(s) 112
CviAII CATG 4 cut(s) 139, 145, 176, 188
CviJI RGCY 3 cut(s) 68, 181, 211
CviKI_1 RGCY 3 cut(s) 68, 181, 211
DdeI CTNAG 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 209
FaeI CATG 4 cut(s) 142, 148, 179, 191
FaiI YATR 6 cut(s) 14, 100, 140, 146, 177, 189
FatI CATG 4 cut(s) 138, 144, 175, 187
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 2 cut(s) 38, 47
HaeIII GGCC 2 cut(s) 68, 211
HapII CCGG 1 cut(s) 93
Hin1II CATG 4 cut(s) 142, 148, 179, 191
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 100, 160
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 100, 160
HpyCH4V TGCA 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 4 cut(s) 142, 148, 179, 191
KspI CCGCGG 1 cut(s) 112
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 7 cut(s) 2, 11, 21, 49, 106, 177, 193
LweI GCATC 1 cut(s) 31
MboII GAAGA 2 cut(s) 94, 97
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 1 cut(s) 183
MluNI TGGCCA 1 cut(s) 211
MnlI CCTC 1 cut(s) 148
Mox20I TGGCCA 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 199
MscI TGGCCA 1 cut(s) 211
MslI CAYNNNNRTG 2 cut(s) 143, 202
Msp20I TGGCCA 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 111
NlaIII CATG 4 cut(s) 142, 148, 179, 191
NspI RCATGY 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 66
RseI CAYNNNNRTG 2 cut(s) 143, 202
SacII CCGCGG 1 cut(s) 112
SatI GCNGC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 66
SetI ASST 2 cut(s) 159, 183
SfaNI GCATC 1 cut(s) 31
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 143, 202
Sse9I AATT 1 cut(s) 183
SsiI CCGC 3 cut(s) 106, 109, 111
TasI AATT 1 cut(s) 183
TauI GCSGC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 62, 155, 176
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.