Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Forward (+)

52844735 .. 52846355

Gene Structure 1621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAACAAGGTAGTAGATCCAAAATCCATGCAGATCCCCGACTATCGATTTTGGATCTGGTCCGATGGTGAAGTTTCTGCTGGAGCATCCGGAGAAATCGATTTTGGATATGCTCCGACGGTGAAATTTCGCTGGAGCATCGGTCTTAATCGAGTTTGGATCTGCTCCGATGGTGAAGTTTCTGCTGGAGCATTTGGAGAAATCGGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCTCCAATGGTGAACTGGGCTAATTGCCCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACCGTAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAGCTCAGTTCATTGATCAAGACCCTTTGCAGCAGCAAGTGCAATTTTCAGTTCAGGCTAGTTCATAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

162

Amino Acids

18.34

Weight (kDa)

6.43

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	70 - 129	3.7e-21	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	89
AclWI	GGATC	4 cut(s)	11, 28, 62, 167
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	2 cut(s)	125, 377
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	2 cut(s)	256, 418
AluI	AGCT	2 cut(s)	256, 418
AlwI	GGATC	4 cut(s)	11, 28, 62, 167
Aor13HI	TCCGGA	1 cut(s)	89
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	3 cut(s)	284, 444, 447
ApoI	RAATTY	2 cut(s)	125, 377
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	5 cut(s)	80, 133, 185, 307, 368
AvaII	GGWCC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	271, 456, 459
BccI	CCATC	3 cut(s)	59, 164, 354
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BclI	TGATCA	1 cut(s)	429
BfaI	CTAG	1 cut(s)	473
BisI	GCNGC	3 cut(s)	285, 445, 448
BlsI	GCNGC	3 cut(s)	286, 446, 449
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	2 cut(s)	95, 147
BmuI	ACTGGG	1 cut(s)	310
BpmI	CTGGAG	3 cut(s)	102, 154, 207
Bsa29I	ATCGAT	2 cut(s)	46, 99
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bse1I	ACTGG	1 cut(s)	305
BseAI	TCCGGA	1 cut(s)	89
BseCI	ATCGAT	2 cut(s)	46, 99
BseGI	GGATG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	3 cut(s)	271, 456, 459
BshFI	GGCC	1 cut(s)	345
BshVI	ATCGAT	2 cut(s)	46, 99
BsiSI	CCGG	1 cut(s)	90
BsnI	GGCC	1 cut(s)	345
Bsp13I	TCCGGA	1 cut(s)	89
Bsp143I	GATC	5 cut(s)	16, 33, 54, 159, 429
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	432
BspDI	ATCGAT	2 cut(s)	46, 99
BspEI	TCCGGA	1 cut(s)	89
BspPI	GGATC	4 cut(s)	11, 28, 62, 167
BsrI	ACTGG	1 cut(s)	305
BssMI	GATC	5 cut(s)	16, 33, 54, 159, 429
Bst4CI	ACNGT	2 cut(s)	121, 368
BstAPI	GCANNNNNTGC	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	350, 419
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	5 cut(s)	19, 36, 57, 162, 432
BstMBI	GATC	5 cut(s)	16, 33, 54, 159, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	271, 456, 459
BstX2I	RGATCY	4 cut(s)	16, 33, 54, 159
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstYI	RGATCY	4 cut(s)	16, 33, 54, 159
Bsu15I	ATCGAT	2 cut(s)	46, 99
BsuRI	GGCC	1 cut(s)	345
BsuTUI	ATCGAT	2 cut(s)	46, 99
BtsCI	GGATG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	60
ClaI	ATCGAT	2 cut(s)	46, 99
CviAII	CATG	6 cut(s)	28, 214, 220, 251, 263, 320
CviJI	RGCY	6 cut(s)	256, 284, 305, 345, 418, 472
CviKI_1	RGCY	6 cut(s)	256, 284, 305, 345, 418, 472
DdeI	CTNAG	2 cut(s)	350, 419
DpnI	GATC	5 cut(s)	18, 35, 56, 161, 431
DpnII	GATC	5 cut(s)	16, 33, 54, 159, 429
EaeI	YGGCCR	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	60
FaeI	CATG	6 cut(s)	31, 217, 223, 254, 266, 323
FaiI	YATR	9 cut(s)	29, 111, 215, 221, 252, 264, 321, 480, 487
FatI	CATG	6 cut(s)	27, 213, 219, 250, 262, 319
FbaI	TGATCA	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	285, 445, 448
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	285, 445, 448
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	3 cut(s)	285, 445, 448
GsuI	CTGGAG	3 cut(s)	102, 154, 207
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	6 cut(s)	31, 217, 223, 254, 266, 323
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	334, 398
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	5 cut(s)	80, 133, 185, 307, 368
Hpy166II	GTNNAC	4 cut(s)	235, 298, 371, 412
Hpy188I	TCNGA	3 cut(s)	64, 117, 169
Hpy188III	TCNNGA	3 cut(s)	90, 402, 433
Hpy8I	GTNNAC	4 cut(s)	235, 298, 371, 412
Hpy99I	CGWCG	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	121, 368
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	4 cut(s)	31, 223, 444, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpyF3I	CTNAG	2 cut(s)	350, 419
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	6 cut(s)	31, 217, 223, 254, 266, 323
Kpn2I	TCCGGA	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	5 cut(s)	16, 33, 54, 159, 429
LmnI	GCTCC	6 cut(s)	83, 118, 135, 170, 188, 292
LpnPI	CCDG	8 cut(s)	43, 66, 103, 118, 171, 286, 327, 454
Lsp1109I	GCAGC	3 cut(s)	271, 456, 459
LweI	GCATC	2 cut(s)	95, 147
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	373
MalI	GATC	5 cut(s)	18, 35, 56, 161, 431
MboI	GATC	5 cut(s)	16, 33, 54, 159, 429
MboII	GAAGA	1 cut(s)	407
MflI	RGATCY	4 cut(s)	16, 33, 54, 159
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	6 cut(s)	125, 258, 307, 377, 405, 457
MluNI	TGGCCA	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	2 cut(s)	223, 324
Mox20I	TGGCCA	1 cut(s)	345
MroI	TCCGGA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	2 cut(s)	218, 351
Msp20I	TGGCCA	1 cut(s)	345
MspI	CCGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	453
NdeII	GATC	5 cut(s)	16, 33, 54, 159, 429
NlaIII	CATG	6 cut(s)	31, 217, 223, 254, 266, 323
NspI	RCATGY	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	334, 398
PkrI	GCNGC	3 cut(s)	286, 446, 449
PspPI	GGNCC	1 cut(s)	60
PsuI	RGATCY	4 cut(s)	16, 33, 54, 159
RseI	CAYNNNNRTG	2 cut(s)	218, 351
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	285, 445, 448
Sau3AI	GATC	5 cut(s)	16, 33, 54, 159, 429
Sau96I	GGNCC	1 cut(s)	60
SetI	ASST	5 cut(s)	12, 234, 258, 376, 420
SfaNI	GCATC	2 cut(s)	95, 147
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	218, 351
Sse9I	AATT	6 cut(s)	125, 258, 307, 377, 405, 457
SspMI	CTAG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	121, 368
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	4 cut(s)	46, 99, 151, 401
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	6 cut(s)	125, 258, 307, 377, 405, 457
TfiI	GAWTC	2 cut(s)	334, 398
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseI	GCWGC	3 cut(s)	284, 444, 447
TspDTI	ATGAA	5 cut(s)	17, 230, 251, 414, 467
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	2 cut(s)	125, 377
XceI	RCATGY	1 cut(s)	223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	297
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.