Rh5AG519300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000640
Physical Location & Seq
Reverse (-)
88604727 .. 88605017
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG519300.1

Sequence Viewer

Length: 291 bp
ATGGGAAGGATCGGCCGAGGGGACGCCGGAAAATCGGGTTTCCGGCCGGGTCGGGTCGAGCTGGACTGTGGCTACTTCGATCCAAGCTTGGGGGCAGCGGCGCAGCAAGTTGGTGGCACCAGGCCACTGGGCGGCTCTAGGCGAGTGCAGGGAGGGCCGGGTCCTCGGCGGGGGAGGCCGGAGGAGAGAGATAGGCTCGGGTCGGGTCAAGCGGGTCGGCGGCGTGGGAGAGGAGAGAGAACGGAGAAAACTAGGGACCAAAGCGCAAAATCTGGAATTTTTCGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.23

Weight (kDa)

11.67

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 5 cut(s) 98, 132, 169, 212, 220
AclWI GGATC 2 cut(s) 17, 74
AcoI YGGCCR 2 cut(s) 13, 44
AcsI RAATTY 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 24
AfiI CCNNNNNNNGG 3 cut(s) 89, 131, 170
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 61, 87
AluI AGCT 2 cut(s) 61, 87
AlwI GGATC 2 cut(s) 17, 74
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 5 cut(s) 13, 44, 122, 155, 176
ApeKI GCWGC 2 cut(s) 95, 103
ApoI RAATTY 1 cut(s) 276
AspLEI GCGC 2 cut(s) 103, 266
AspS9I GGNCC 3 cut(s) 155, 161, 256
AsuC2I CCSGG 2 cut(s) 48, 159
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 2 cut(s) 161, 256
BanI GGYRCC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 107, 115
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 2 cut(s) 48, 159
BfaI CTAG 2 cut(s) 138, 252
BisI GCNGC 5 cut(s) 96, 99, 104, 133, 221
BlsI GCNGC 5 cut(s) 97, 100, 105, 134, 222
Bme1390I CCNGG 3 cut(s) 48, 121, 159
Bme18I GGWCC 2 cut(s) 161, 256
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 3 cut(s) 155, 161, 256
BmiI GGNNCC 3 cut(s) 118, 162, 257
BmrFI CCNGG 3 cut(s) 48, 121, 159
BmrI ACTGGG 1 cut(s) 137
BmuI ACTGGG 1 cut(s) 137
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpuMI CCSGG 2 cut(s) 48, 159
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 16, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 131, 170
Bse1I ACTGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 16, 164
BseLI CCNNNNNNNGG 3 cut(s) 89, 131, 170
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 2 cut(s) 197, 246
BseX3I CGGCCG 2 cut(s) 13, 44
BseXI GCAGC 2 cut(s) 107, 115
BsgI GTGCAG 1 cut(s) 167
Bsh1285I CGRYCG 2 cut(s) 16, 47
BshFI GGCC 5 cut(s) 15, 46, 124, 157, 178
BshNI GGYRCC 1 cut(s) 116
BsiEI CGRYCG 2 cut(s) 16, 47
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 5 cut(s) 27, 43, 47, 158, 179
BslFI GGGAC 2 cut(s) 35, 269
BslI CCNNNNNNNGG 3 cut(s) 89, 131, 170
BsmFI GGGAC 2 cut(s) 35, 269
BsnI GGCC 5 cut(s) 15, 46, 124, 157, 178
BsoBI CYCGRG 1 cut(s) 197
Bsp143I GATC 2 cut(s) 9, 79
BspACI CCGC 5 cut(s) 98, 132, 169, 212, 220
BspANI GGCC 5 cut(s) 15, 46, 124, 157, 178
BspLI GGNNCC 3 cut(s) 118, 162, 257
BspPI GGATC 2 cut(s) 17, 74
BspT107I GGYRCC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 16, 164
BssMI GATC 2 cut(s) 9, 79
BssNI GRCGYC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 24
BstHHI GCGC 2 cut(s) 103, 266
BstKTI GATC 2 cut(s) 12, 82
BstMBI GATC 2 cut(s) 9, 79
BstMCI CGRYCG 2 cut(s) 16, 47
BstMWI GCNNNNNNNGC 2 cut(s) 154, 175
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 3 cut(s) 46, 119, 157
BstV1I GCAGC 2 cut(s) 107, 115
BstXI CCANNNNNNTGG 1 cut(s) 127
BstZI CGGCCG 2 cut(s) 13, 44
BsuRI GGCC 5 cut(s) 15, 46, 124, 157, 178
BtsIMutI CAGTG 1 cut(s) 125
CfoI GCGC 2 cut(s) 103, 266
Cfr13I GGNCC 3 cut(s) 155, 161, 256
CseI GACGC 1 cut(s) 32
DpnI GATC 2 cut(s) 11, 81
DpnII GATC 2 cut(s) 9, 79
EaeI YGGCCR 2 cut(s) 13, 44
EagI CGGCCG 2 cut(s) 13, 44
EclXI CGGCCG 2 cut(s) 13, 44
Eco47I GGWCC 2 cut(s) 161, 256
Eco52I CGGCCG 2 cut(s) 13, 44
Eco88I CYCGRG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 119
FaqI GGGAC 2 cut(s) 35, 269
FauI CCCGC 2 cut(s) 162, 205
Fnu4HI GCNGC 5 cut(s) 96, 99, 104, 133, 221
Fsp4HI GCNGC 5 cut(s) 96, 99, 104, 133, 221
FspBI CTAG 2 cut(s) 138, 252
GlaI GCGC 2 cut(s) 102, 265
GluI GCNGC 5 cut(s) 96, 99, 104, 133, 221
HaeIII GGCC 5 cut(s) 15, 46, 124, 157, 178
HapII CCGG 5 cut(s) 27, 43, 47, 158, 179
HgaI GACGC 1 cut(s) 32
HhaI GCGC 2 cut(s) 103, 266
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 2 cut(s) 101, 264
HinP1I GCGC 2 cut(s) 101, 264
HindIII AAGCTT 1 cut(s) 85
HpaII CCGG 5 cut(s) 27, 43, 47, 158, 179
Hpy188III TCNNGA 1 cut(s) 273
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 175
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 2 cut(s) 101, 264
Kzo9I GATC 2 cut(s) 9, 79
Lsp1109I GCAGC 2 cut(s) 107, 115
MaeI CTAG 2 cut(s) 138, 252
MalI GATC 2 cut(s) 11, 81
MboI GATC 2 cut(s) 9, 79
MluCI AATT 1 cut(s) 276
MnlI CCTC 6 cut(s) 11, 146, 168, 174, 175, 224
MseI TTAA 1 cut(s) 289
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 5 cut(s) 27, 43, 47, 158, 179
MspR9I CCNGG 3 cut(s) 48, 121, 159
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 154, 175
NciI CCSGG 2 cut(s) 48, 159
NdeII GATC 2 cut(s) 9, 79
NlaIV GGNNCC 3 cut(s) 118, 162, 257
NmeAIII GCCGAG 2 cut(s) 41, 145
PkrI GCNGC 5 cut(s) 97, 100, 105, 134, 222
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 3 cut(s) 118, 162, 257
PspPI GGNCC 3 cut(s) 155, 161, 256
PspPPI RGGWCCY 1 cut(s) 161
SaqAI TTAA 1 cut(s) 289
SatI GCNGC 5 cut(s) 96, 99, 104, 133, 221
Sau3AI GATC 2 cut(s) 9, 79
Sau96I GGNCC 3 cut(s) 155, 161, 256
ScrFI CCNGG 3 cut(s) 48, 121, 159
SetI ASST 2 cut(s) 63, 89
SinI GGWCC 2 cut(s) 161, 256
Sse9I AATT 1 cut(s) 276
SsiI CCGC 5 cut(s) 98, 132, 169, 212, 220
SspMI CTAG 2 cut(s) 138, 252
StyD4I CCNGG 3 cut(s) 46, 119, 157
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 57, 78
TasI AATT 1 cut(s) 276
TauI GCSGC 3 cut(s) 101, 135, 223
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
TscAI CASTG 1 cut(s) 132
TseI GCWGC 2 cut(s) 95, 103
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 161, 256
XapI RAATTY 1 cut(s) 276
XspI CTAG 2 cut(s) 138, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.