Rroxscaffold_4G00299040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000640
Physical Location & Seq
Reverse (-)
18959585 .. 18960685
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299040.1

Sequence Viewer

Length: 360 bp
ATGGGAAGGATCGGCCGAGGGGACGCCGAAAACGGAATTCCGGGTCGGGTTTCGGCTTCGGGGAAGGGCTTCGATCCATGTTTGGGGGCAGCGGCGGAGCAAGGCGGTGGCACCGGGCGCCGAGCGGCTCGATCCCGGTGCAAGGAAAGCCGGGTCCGCGGCGGAGGTGGCCGGAGAAGAGAGTTCGGCCGGTTTTGCCATTCCTCTTTTACGCATGTCTCCATCACCATTTCAAGCCGAGATGCCGTGCTTCGCCCTTGTTTCGACGACAAACACCACCCCTCGAGTTCCGACGACGAGGACCTCGACTGGAGCCCGTCGTGCTCATCTCCGAAATCGAGGTTCCACTCTAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.8

Weight (kDa)

9.55

Isoelectric Point (pI)

64.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 110, 117
AccBSI CCGCTC 1 cut(s) 125
AccII CGCG 1 cut(s) 159
AciI CCGC 7 cut(s) 92, 95, 105, 125, 157, 159, 162
AclWI GGATC 3 cut(s) 17, 68, 126
AcoI YGGCCR 3 cut(s) 13, 169, 187
AcsI RAATTY 1 cut(s) 36
AcyI GRCGYC 2 cut(s) 24, 118
AfiI CCNNNNNNNGG 2 cut(s) 83, 142
AgsI TTSAA 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 3 cut(s) 17, 68, 126
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 3 cut(s) 13, 169, 187
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 154, 301
AsuC2I CCSGG 4 cut(s) 42, 115, 136, 152
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 2 cut(s) 154, 301
BanI GGYRCC 2 cut(s) 110, 117
BanII GRGCYC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BcnI CCSGG 4 cut(s) 42, 115, 136, 152
BcoDI GTCTC 1 cut(s) 223
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 4 cut(s) 90, 93, 126, 160
BlsI GCNGC 4 cut(s) 91, 94, 127, 161
Bme1390I CCNGG 4 cut(s) 42, 115, 136, 152
Bme18I GGWCC 2 cut(s) 154, 301
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 154, 301
BmiI GGNNCC 5 cut(s) 112, 119, 155, 314, 344
BmrFI CCNGG 4 cut(s) 42, 115, 136, 152
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 331
BpuMI CCSGG 4 cut(s) 42, 115, 136, 152
BsaHI GRCGYC 2 cut(s) 24, 118
BsaJI CCNNGG 2 cut(s) 16, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 142
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 16, 157
BseLI CCNNNNNNNGG 2 cut(s) 83, 142
BseNI ACTGG 1 cut(s) 314
BseX3I CGGCCG 2 cut(s) 13, 187
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 2 cut(s) 16, 190
BshFI GGCC 3 cut(s) 15, 171, 189
BshNI GGYRCC 2 cut(s) 110, 117
BsiEI CGRYCG 2 cut(s) 16, 190
BsiHKAI GWGCWC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 6 cut(s) 41, 114, 136, 151, 172, 190
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 83, 142
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 3 cut(s) 15, 171, 189
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 317, 326
Bsp143I GATC 3 cut(s) 9, 73, 131
BspACI CCGC 7 cut(s) 92, 95, 105, 125, 157, 159, 162
BspANI GGCC 3 cut(s) 15, 171, 189
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 5 cut(s) 112, 119, 155, 314, 344
BspPI GGATC 3 cut(s) 17, 68, 126
BspT107I GGYRCC 2 cut(s) 110, 117
BsrBI CCGCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 16, 157
BssMI GATC 3 cut(s) 9, 73, 131
BssNI GRCGYC 2 cut(s) 24, 118
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 2 cut(s) 24, 118
BstDSI CCRYGG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 3 cut(s) 12, 76, 134
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 3 cut(s) 9, 73, 131
BstMCI CGRYCG 2 cut(s) 16, 190
BstMWI GCNNNNNNNGC 6 cut(s) 117, 147, 156, 168, 195, 321
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 40, 113, 134, 150
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 101
BstZI CGGCCG 2 cut(s) 13, 187
BsuRI GGCC 3 cut(s) 15, 171, 189
BtgI CCRYGG 1 cut(s) 157
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 154, 301
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 1 cut(s) 32
CviAII CATG 2 cut(s) 78, 215
CviJI RGCY 9 cut(s) 15, 56, 69, 128, 150, 171, 189, 237, 315
CviKI_1 RGCY 9 cut(s) 15, 56, 69, 128, 150, 171, 189, 237, 315
DinI GGCGCC 1 cut(s) 119
DpnI GATC 3 cut(s) 11, 75, 133
DpnII GATC 3 cut(s) 9, 73, 131
EaeI YGGCCR 3 cut(s) 13, 169, 187
EagI CGGCCG 2 cut(s) 13, 187
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
EciI GGCGGA 2 cut(s) 110, 177
EclXI CGGCCG 2 cut(s) 13, 187
Eco24I GRGCYC 1 cut(s) 317
Eco47I GGWCC 2 cut(s) 154, 301
Eco52I CGGCCG 2 cut(s) 13, 187
Eco88I CYCGRG 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 301
EcoRI GAATTC 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 317
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
FaeI CATG 2 cut(s) 81, 218
FaiI YATR 2 cut(s) 79, 216
FaqI GGGAC 1 cut(s) 35
FatI CATG 2 cut(s) 77, 214
Fnu4HI GCNGC 4 cut(s) 90, 93, 126, 160
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 4 cut(s) 90, 93, 126, 160
GlaI GCGC 1 cut(s) 119
GluI GCNGC 4 cut(s) 90, 93, 126, 160
GsuI CTGGAG 1 cut(s) 331
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 3 cut(s) 15, 171, 189
HapII CCGG 6 cut(s) 41, 114, 136, 151, 172, 190
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 2 cut(s) 24, 118
Hin1II CATG 2 cut(s) 81, 218
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HpaII CCGG 6 cut(s) 41, 114, 136, 151, 172, 190
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 292, 333
Hpy99I CGWCG 4 cut(s) 269, 296, 299, 322
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 147, 156, 168, 195, 321
Hsp92I GRCGYC 2 cut(s) 24, 118
Hsp92II CATG 2 cut(s) 81, 218
HspAI GCGC 1 cut(s) 118
KasI GGCGCC 1 cut(s) 117
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 3 cut(s) 9, 73, 131
LmnI GCTCC 2 cut(s) 97, 312
LpnPI CCDG 7 cut(s) 54, 127, 149, 164, 185, 203, 295
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 232
MalI GATC 3 cut(s) 11, 75, 133
MbiI CCGCTC 1 cut(s) 125
MboI GATC 3 cut(s) 9, 73, 131
MboII GAAGA 1 cut(s) 189
MhlI GDGCHC 2 cut(s) 317, 326
MluCI AATT 1 cut(s) 36
Mly113I GGCGCC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 7 cut(s) 11, 158, 214, 292, 292, 314, 333
MroXI GAANNNNTTC 1 cut(s) 68
MspA1I CMGCKG 2 cut(s) 92, 159
MspI CCGG 6 cut(s) 41, 114, 136, 151, 172, 190
MspR9I CCNGG 4 cut(s) 42, 115, 136, 152
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 6 cut(s) 117, 147, 156, 168, 195, 321
NarI GGCGCC 1 cut(s) 118
NciI CCSGG 4 cut(s) 42, 115, 136, 152
NdeII GATC 3 cut(s) 9, 73, 131
NlaIII CATG 2 cut(s) 81, 218
NlaIV GGNNCC 5 cut(s) 112, 119, 155, 314, 344
NmeAIII GCCGAG 3 cut(s) 41, 146, 263
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 68
PkrI GCNGC 4 cut(s) 91, 94, 127, 161
PluTI GGCGCC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 301
Psp5II RGGWCCY 1 cut(s) 301
PspN4I GGNNCC 5 cut(s) 112, 119, 155, 314, 344
PspPI GGNCC 2 cut(s) 154, 301
PspPPI RGGWCCY 1 cut(s) 301
PspXI VCTCGAGB 1 cut(s) 283
SacII CCGCGG 1 cut(s) 160
SatI GCNGC 4 cut(s) 90, 93, 126, 160
Sau3AI GATC 3 cut(s) 9, 73, 131
Sau96I GGNCC 2 cut(s) 154, 301
ScrFI CCNGG 4 cut(s) 42, 115, 136, 152
SduI GDGCHC 2 cut(s) 317, 326
SetI ASST 3 cut(s) 169, 306, 344
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 119
Sfr274I CTCGAG 1 cut(s) 283
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 2 cut(s) 154, 301
SlaI CTCGAG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 1 cut(s) 36
SsiI CCGC 7 cut(s) 92, 95, 105, 125, 157, 159, 162
SspDI GGCGCC 1 cut(s) 117
StyD4I CCNGG 4 cut(s) 40, 113, 134, 150
TaqI TCGA 6 cut(s) 72, 130, 264, 284, 306, 338
TasI AATT 1 cut(s) 36
TauI GCSGC 3 cut(s) 95, 128, 162
TseI GCWGC 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 48
VpaK11BI GGWCC 2 cut(s) 154, 301
XapI RAATTY 1 cut(s) 36
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.