Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Reverse (-)

44549329 .. 44550223

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAACAAGGTAGTAGATCCAAAATCCATGCAGATCTCCCACTATCGATTTTGGATCTGCTCCGATGGTGAAGTTTCTGCTGGAGCATCTGGAGAAATCGATTTTCGATCTGCTCCGGCGGTGAAGTTTCTATTGGAGCATCATTTCTGCTGGAGCATCTGGAGAAATCGATTTTCGATCTGCTCCGACGGTGAAGTTTCTGCTGGAGCATTAGTCTTAATCGAGTTTGGATCTGCTCTGATGGTGAAGTTTCAGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGTCGCTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCGCGGATGGGGTGTGTTCTGTGGCCCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTATAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

160

Amino Acids

17.82

Weight (kDa)

7.09

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	126 - 148	1e-06	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	351
AciI	CCGC	4 cut(s)	119, 346, 349, 351
AclWI	GGATC	3 cut(s)	11, 62, 238
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AlwI	GGATC	3 cut(s)	11, 62, 238
AoxI	GGCC	2 cut(s)	370, 403
ApoI	RAATTY	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	5 cut(s)	80, 133, 203, 256, 428
BalI	TGGCCA	1 cut(s)	405
BccI	CCATC	4 cut(s)	59, 235, 348, 414
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	371
BmsI	GCATC	4 cut(s)	95, 148, 165, 271
BpmI	CTGGAG	7 cut(s)	102, 111, 172, 181, 225, 278, 287
Bsa29I	ATCGAT	3 cut(s)	46, 99, 169
BsaJI	CCNNGG	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	313
BseCI	ATCGAT	3 cut(s)	46, 99, 169
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	372, 405
BshVI	ATCGAT	3 cut(s)	46, 99, 169
BsiSI	CCGG	2 cut(s)	116, 333
BslI	CCNNNNNNNGG	1 cut(s)	355
BsnI	GGCC	2 cut(s)	372, 405
Bsp143I	GATC	6 cut(s)	16, 33, 54, 107, 177, 230
BspACI	CCGC	4 cut(s)	119, 346, 349, 351
BspANI	GGCC	2 cut(s)	372, 405
BspDI	ATCGAT	3 cut(s)	46, 99, 169
BspFNI	CGCG	1 cut(s)	351
BspPI	GGATC	3 cut(s)	11, 62, 238
BsrDI	GCAATG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	6 cut(s)	16, 33, 54, 107, 177, 230
BssNAI	GTATAC	1 cut(s)	340
Bst1107I	GTATAC	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	410
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	359
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	6 cut(s)	19, 36, 57, 110, 180, 233
BstMBI	GATC	6 cut(s)	16, 33, 54, 107, 177, 230
BstUI	CGCG	1 cut(s)	351
BstX2I	RGATCY	4 cut(s)	16, 33, 54, 230
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	4 cut(s)	16, 33, 54, 230
BstZ17I	GTATAC	1 cut(s)	340
Bsu15I	ATCGAT	3 cut(s)	46, 99, 169
BsuRI	GGCC	2 cut(s)	372, 405
BsuTUI	ATCGAT	3 cut(s)	46, 99, 169
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	371
Cfr42I	CCGCGG	1 cut(s)	352
ClaI	ATCGAT	3 cut(s)	46, 99, 169
CviAII	CATG	2 cut(s)	28, 380
CviJI	RGCY	3 cut(s)	256, 372, 405
CviKI_1	RGCY	3 cut(s)	256, 372, 405
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	6 cut(s)	18, 35, 56, 109, 179, 232
DpnII	GATC	6 cut(s)	16, 33, 54, 107, 177, 230
EaeI	YGGCCR	1 cut(s)	403
FaeI	CATG	2 cut(s)	31, 383
FaiI	YATR	4 cut(s)	29, 340, 381, 429
FatI	CATG	2 cut(s)	27, 379
FauI	CCCGC	1 cut(s)	353
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	349
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	349
GluI	GCNGC	1 cut(s)	349
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	7 cut(s)	102, 111, 172, 181, 225, 278, 287
HaeIII	GGCC	2 cut(s)	372, 405
HapII	CCGG	2 cut(s)	116, 333
Hin1II	CATG	2 cut(s)	31, 383
HinfI	GANTC	2 cut(s)	394, 458
HpaII	CCGG	2 cut(s)	116, 333
HphI	GGTGA	5 cut(s)	80, 133, 203, 256, 428
Hpy166II	GTNNAC	2 cut(s)	340, 472
Hpy188I	TCNGA	3 cut(s)	64, 187, 240
Hpy188III	TCNNGA	4 cut(s)	90, 160, 266, 462
Hpy8I	GTNNAC	2 cut(s)	340, 472
Hpy99I	CGWCG	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	2 cut(s)	31, 383
KspI	CCGCGG	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	16, 33, 54, 107, 177, 230
LmnI	GCTCC	8 cut(s)	65, 83, 118, 136, 153, 188, 206, 259
LweI	GCATC	4 cut(s)	95, 148, 165, 271
MaeII	ACGT	1 cut(s)	433
MalI	GATC	6 cut(s)	18, 35, 56, 109, 179, 232
MboI	GATC	6 cut(s)	16, 33, 54, 107, 177, 230
MboII	GAAGA	3 cut(s)	334, 337, 467
MflI	RGATCY	4 cut(s)	16, 33, 54, 230
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	2 cut(s)	437, 465
MluNI	TGGCCA	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	1 cut(s)	384
Mox20I	TGGCCA	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	256, 351
MspI	CCGG	2 cut(s)	116, 333
MvnI	CGCG	1 cut(s)	351
NdeII	GATC	6 cut(s)	16, 33, 54, 107, 177, 230
NlaIII	CATG	2 cut(s)	31, 383
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	394, 458
PkrI	GCNGC	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	371
PsuI	RGATCY	4 cut(s)	16, 33, 54, 230
PvuII	CAGCTG	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	411
SacII	CCGCGG	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	6 cut(s)	16, 33, 54, 107, 177, 230
Sau96I	GGNCC	1 cut(s)	371
SetI	ASST	3 cut(s)	12, 258, 436
SfaNI	GCATC	4 cut(s)	95, 148, 165, 271
Sfr303I	CCGCGG	1 cut(s)	352
SgrBI	CCGCGG	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	2 cut(s)	437, 465
SsiI	CCGC	4 cut(s)	119, 346, 349, 351
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	7 cut(s)	46, 99, 106, 169, 176, 222, 461
TasI	AATT	2 cut(s)	437, 465
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	394, 458
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.