Rroxscaffold_7G00195020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000640
Physical Location & Seq
Reverse (-)
37182965 .. 37183764
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195020.1

Sequence Viewer

Length: 288 bp
ATGCAAATCCCCCACTATCGATTTTGGATCCGCTCCGATGGTGAAGTTTCTGCTGGAGCATCCGGAGAAATCGATTTTAGATCTGCTCCGATGGTGAAGTTTCTGCTGGAGCATTTGGAGAAATCTGGGGTGTGGGATATTAGACGGGTCTTGTTGGGCCGTTCATTGCGAGAAGAAGATTGCTGGAGTATACACCCCGCCACGGATGGATTCATGCTGGCCATCTTAGTGGTGATTGTCACTATAAACGTGAATTTTTGCTATGCCAAGAAGATTCAAGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.92

Weight (kDa)

6.27

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 190
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 2 cut(s) 31, 198
AclWI GGATC 2 cut(s) 22, 35
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 278
AlwI GGATC 2 cut(s) 22, 35
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 2 cut(s) 157, 219
ApoI RAATTY 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 3 cut(s) 53, 106, 244
BalI TGGCCA 1 cut(s) 221
BamHI GGATCC 1 cut(s) 27
BccI CCATC 4 cut(s) 32, 85, 200, 230
BceAI ACGGC 1 cut(s) 144
BglII AGATCT 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 29
BmsI GCATC 1 cut(s) 68
BpmI CTGGAG 3 cut(s) 75, 128, 205
Bsa29I ATCGAT 2 cut(s) 19, 72
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 164
BseAI TCCGGA 1 cut(s) 62
BseCI ATCGAT 2 cut(s) 19, 72
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 59, 211
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 164
BshFI GGCC 2 cut(s) 159, 221
BshVI ATCGAT 2 cut(s) 19, 72
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 202
BsnI GGCC 2 cut(s) 159, 221
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 2 cut(s) 27, 80
BspACI CCGC 2 cut(s) 31, 198
BspANI GGCC 2 cut(s) 159, 221
BspDI ATCGAT 2 cut(s) 19, 72
BspEI TCCGGA 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 2 cut(s) 22, 35
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 27, 80
BssNAI GTATAC 1 cut(s) 191
Bst1107I GTATAC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 226
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 59, 211
BstKTI GATC 2 cut(s) 30, 83
BstMBI GATC 2 cut(s) 27, 80
BstX2I RGATCY 2 cut(s) 27, 80
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 2 cut(s) 27, 80
BstZ17I GTATAC 1 cut(s) 191
Bsu15I ATCGAT 2 cut(s) 19, 72
BsuRI GGCC 2 cut(s) 159, 221
BsuTUI ATCGAT 2 cut(s) 19, 72
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 59, 211
Cac8I GCNNGC 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 2 cut(s) 19, 72
CviAII CATG 1 cut(s) 214
CviJI RGCY 2 cut(s) 159, 221
CviKI_1 RGCY 2 cut(s) 159, 221
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 29, 82
DpnII GATC 2 cut(s) 27, 80
EaeI YGGCCR 1 cut(s) 219
FaeI CATG 1 cut(s) 217
FaiI YATR 4 cut(s) 191, 215, 245, 264
FatI CATG 1 cut(s) 213
FauI CCCGC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 190
FokI GGATG 2 cut(s) 46, 218
GsuI CTGGAG 3 cut(s) 75, 128, 205
HaeIII GGCC 2 cut(s) 159, 221
HapII CCGG 1 cut(s) 63
Hin1II CATG 1 cut(s) 217
HinfI GANTC 2 cut(s) 210, 274
HpaII CCGG 1 cut(s) 63
HphI GGTGA 3 cut(s) 53, 106, 244
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 37, 90
Hpy188III TCNNGA 2 cut(s) 63, 278
Hpy8I GTNNAC 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 1 cut(s) 217
Kpn2I TCCGGA 1 cut(s) 62
Kzo9I GATC 2 cut(s) 27, 80
LmnI GCTCC 4 cut(s) 38, 56, 91, 109
LpnPI CCDG 6 cut(s) 39, 76, 92, 111, 169, 203
LweI GCATC 1 cut(s) 68
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 29, 82
MbiI CCGCTC 1 cut(s) 33
MboI GATC 2 cut(s) 27, 80
MboII GAAGA 3 cut(s) 185, 188, 283
MflI RGATCY 2 cut(s) 27, 80
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 2 cut(s) 253, 281
MluNI TGGCCA 1 cut(s) 221
Mox20I TGGCCA 1 cut(s) 221
MroI TCCGGA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 1 cut(s) 63
NdeII GATC 2 cut(s) 27, 80
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 238
PfeI GAWTC 2 cut(s) 210, 274
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 2 cut(s) 27, 80
RseI CAYNNNNRTG 1 cut(s) 227
Sau3AI GATC 2 cut(s) 27, 80
Sau96I GGNCC 1 cut(s) 157
SetI ASST 1 cut(s) 252
SfaNI GCATC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 2 cut(s) 253, 281
SsiI CCGC 2 cut(s) 31, 198
TaiI ACGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 19, 72
TasI AATT 2 cut(s) 253, 281
TfiI GAWTC 2 cut(s) 210, 274
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 153, 202
TspGWI ACGGA 1 cut(s) 218
XapI RAATTY 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.