Rh3DG000800

Mitochondrial inner membrane protease

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
99065 .. 102272
3208 bp
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UTR
Exon/CDS
Intron
Rh3DG000800.1

Sequence Viewer

Length: 264 bp
ATGGTGAAGTTTCTGTTGGAGCATTTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCATTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCGCAGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCTCCAATGGTGAATTGGGCTAATTGCCCTCATCATGCTTGTAGCGAGGTGTGA

Protein Analysis

87

Amino Acids

9.98

Weight (kDa)

6.35

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M76 PF09768 1 - 87 1.3e-23 Peptidase M76 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AciI CCGC 2 cut(s) 106, 109
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 16, 232
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 108
BisI GCNGC 2 cut(s) 109, 210
BlsI GCNGC 2 cut(s) 110, 211
BmgT120I GGNCC 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 68
BspACI CCGC 2 cut(s) 106, 109
BspANI GGCC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 73
BssNAI GTATAC 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 196
BstZ17I GTATAC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 66
CviAII CATG 5 cut(s) 139, 145, 176, 188, 245
CviJI RGCY 4 cut(s) 68, 181, 209, 230
CviKI_1 RGCY 4 cut(s) 68, 181, 209, 230
FaeI CATG 5 cut(s) 142, 148, 179, 191, 248
FaiI YATR 6 cut(s) 100, 140, 146, 177, 189, 246
FatI CATG 5 cut(s) 138, 144, 175, 187, 244
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 109, 210
Fsp4HI GCNGC 2 cut(s) 109, 210
GluI GCNGC 2 cut(s) 109, 210
GsaI CCCAGC 1 cut(s) 67
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 93
Hin1II CATG 5 cut(s) 142, 148, 179, 191, 248
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 16, 232
Hpy166II GTNNAC 2 cut(s) 100, 160
Hpy8I GTNNAC 2 cut(s) 100, 160
HpyCH4V TGCA 1 cut(s) 148
Hsp92II CATG 5 cut(s) 142, 148, 179, 191, 248
LmnI GCTCC 2 cut(s) 19, 217
LpnPI CCDG 3 cut(s) 21, 49, 106
Lsp1109I GCAGC 1 cut(s) 196
MboII GAAGA 2 cut(s) 94, 97
MluCI AATT 3 cut(s) 183, 223, 232
MnlI CCTC 3 cut(s) 148, 249, 250
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 93
NlaIII CATG 5 cut(s) 142, 148, 179, 191, 248
NspI RCATGY 1 cut(s) 148
PkrI GCNGC 2 cut(s) 110, 211
PspFI CCCAGC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 143
SatI GCNGC 2 cut(s) 109, 210
Sau96I GGNCC 1 cut(s) 66
SetI ASST 3 cut(s) 159, 183, 261
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 3 cut(s) 183, 223, 232
SsiI CCGC 2 cut(s) 106, 109
TasI AATT 3 cut(s) 183, 223, 232
TauI GCSGC 1 cut(s) 111
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 62, 155, 176
XceI RCATGY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.