Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Reverse (-)

70103033 .. 70106920

Gene Structure 3888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG481200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCTCCGATGGTGAACTGGGCTAATTGCCCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAATTAGCAAATGATCCTGAACTGACATTACCTTATAACAGGGCGGACTTCACTTGGCCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

94

Amino Acids

10.77

Weight (kDa)

5.49

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 64	2.8e-23	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	182
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	148, 275
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	112, 173
BalI	TGGCCA	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	91, 159
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	2 cut(s)	150, 277
BsnI	GGCC	2 cut(s)	150, 277
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	2 cut(s)	150, 277
BspPI	GGATC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	150, 277
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	148
CviAII	CATG	5 cut(s)	19, 25, 56, 68, 125
CviJI	RGCY	5 cut(s)	61, 89, 110, 150, 277
CviKI_1	RGCY	5 cut(s)	61, 89, 110, 150, 277
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	278
FaeI	CATG	5 cut(s)	22, 28, 59, 71, 128
FaiI	YATR	7 cut(s)	20, 26, 57, 69, 126, 255, 283
FatI	CATG	5 cut(s)	18, 24, 55, 67, 124
Fnu4HI	GCNGC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	150, 277
Hin1II	CATG	5 cut(s)	22, 28, 59, 71, 128
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	139, 203
HphI	GGTGA	2 cut(s)	112, 173
Hpy166II	GTNNAC	4 cut(s)	40, 103, 176, 217
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	207, 236
Hpy8I	GTNNAC	4 cut(s)	40, 103, 176, 217
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	5 cut(s)	22, 28, 59, 71, 128
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	4 cut(s)	91, 132, 244, 249
Lsp1109I	GCAGC	1 cut(s)	76
MaeII	ACGT	1 cut(s)	178
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	5 cut(s)	63, 112, 182, 210, 221
MluNI	TGGCCA	1 cut(s)	150
MnlI	CCTC	2 cut(s)	28, 129
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	23, 156
Msp20I	TGGCCA	1 cut(s)	150
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	5 cut(s)	22, 28, 59, 71, 128
NspI	RCATGY	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	139, 203
PkrI	GCNGC	1 cut(s)	91
PsiI	TTATAA	1 cut(s)	255
PsrI	GAACNNNNNNTAC	2 cut(s)	231, 263
RseI	CAYNNNNRTG	2 cut(s)	23, 156
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	232
SetI	ASST	4 cut(s)	39, 63, 181, 253
SmiMI	CAYNNNNRTG	2 cut(s)	23, 156
Sse9I	AATT	5 cut(s)	63, 112, 182, 210, 221
SsiI	CCGC	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	206
TasI	AATT	5 cut(s)	63, 112, 182, 210, 221
TfiI	GAWTC	2 cut(s)	139, 203
TscAI	CASTG	1 cut(s)	176
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	35, 56
TspRI	CASTG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.