RchiOBHm_Chr6g0297731

Mitochondrial inner membrane protease

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
59405634 .. 59406232
599 bp
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UTR
Exon/CDS
Intron
PRQ26724

Sequence Viewer

Length: 228 bp
ATGGATAATGGTGTGTATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGTTTTTGATGATTGTCGGGCTGCTCCGATGGTGAACTGGGCTAATTGCCCTCATCATGATTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGTTGTGCCAAGAAGATTCGAGAATTGTGAACAAGTGA

Protein Analysis

75

Amino Acids

8.68

Weight (kDa)

5.47

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M76 PF09768 7 - 64 1.4e-19 Peptidase M76 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 185
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 115, 176
BalI TGGCCA 1 cut(s) 153
BbvI GCAGC 1 cut(s) 79
BccI CCATC 2 cut(s) 94, 162
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 79
BshFI GGCC 1 cut(s) 153
BsnI GGCC 1 cut(s) 153
BspANI GGCC 1 cut(s) 153
BspHI TCATGA 1 cut(s) 127
BsrI ACTGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 161
BsuRI GGCC 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 151
CciI TCATGA 1 cut(s) 127
CviAII CATG 5 cut(s) 22, 28, 59, 71, 128
CviJI RGCY 4 cut(s) 64, 92, 113, 153
CviKI_1 RGCY 4 cut(s) 64, 92, 113, 153
DdeI CTNAG 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 151
FaeI CATG 5 cut(s) 25, 31, 62, 74, 131
FaiI YATR 5 cut(s) 23, 29, 60, 72, 129
FatI CATG 5 cut(s) 21, 27, 58, 70, 127
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 5 cut(s) 25, 31, 62, 74, 131
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 2 cut(s) 142, 206
HphI GGTGA 2 cut(s) 115, 176
Hpy166II GTNNAC 4 cut(s) 43, 106, 179, 220
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 128, 210
Hpy8I GTNNAC 4 cut(s) 43, 106, 179, 220
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 5 cut(s) 25, 31, 62, 74, 131
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 94, 135
Lsp1109I GCAGC 1 cut(s) 79
MaeII ACGT 1 cut(s) 181
MboII GAAGA 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 4 cut(s) 66, 115, 185, 213
MluNI TGGCCA 1 cut(s) 153
MnlI CCTC 2 cut(s) 31, 132
Mox20I TGGCCA 1 cut(s) 153
MscI TGGCCA 1 cut(s) 153
MslI CAYNNNNRTG 2 cut(s) 26, 159
Msp20I TGGCCA 1 cut(s) 153
NlaIII CATG 5 cut(s) 25, 31, 62, 74, 131
NspI RCATGY 1 cut(s) 31
PagI TCATGA 1 cut(s) 127
PfeI GAWTC 2 cut(s) 142, 206
PkrI GCNGC 1 cut(s) 94
RseI CAYNNNNRTG 2 cut(s) 26, 159
SatI GCNGC 1 cut(s) 93
SetI ASST 3 cut(s) 42, 66, 184
SmiMI CAYNNNNRTG 2 cut(s) 26, 159
Sse9I AATT 4 cut(s) 66, 115, 185, 213
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 209
TasI AATT 4 cut(s) 66, 115, 185, 213
TfiI GAWTC 2 cut(s) 142, 206
TscAI CASTG 1 cut(s) 179
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 38, 59
TspRI CASTG 1 cut(s) 179
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.