Rroxscaffold_5G00343740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000640
Physical Location & Seq
Reverse (-)
13401787 .. 13416368
14582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343740.1

Sequence Viewer

Length: 525 bp
ATGATGCTTGAGACTAGAACCAAAACAAAACGGACGACGGTGACGGCCCAAGTCGGCGTTTGCTCCAACGATCCGGAGGTTGATGCTGCCATGAATGGTTCCCAATCAGCTTTCCCGGTTGAAAGAAGTGGCCTCAACAGTCCCCAAATCGGCACAAGCGGCAATCACGGCAATTATAGTCACATAGTCCGGTTCCACACCGGACACTGCATCTCACGAAACCACCCCGGCGCTTGCTCAAACCGGCGTCTCTTCACGGACCCACCAATCAAAGTGATCCACGAAACAAGATCTCTCAACCGAGAAGATTACAAGCACAAGAAGGAGCACAAGAAGGAGTTCTTAATTCAAGGTGCTTCAAGGTGGAGGAAACACACACAAGGAGAGGAACTTTGGTGGTTCACTTGGATCGGATTAAAATCACGCTCCAAGGGAGATGCAGTTTTGAGTTTGAGTTTTGACAAGTCCACGGTACTCATTAGCTTTATGAGATGCGTATCCTCTGTCAAATCTACAACTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.7

Weight (kDa)

9.97

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 1 cut(s) 159
AclWI GGATC 3 cut(s) 65, 271, 416
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 3 cut(s) 122, 350, 360
AluBI AGCT 2 cut(s) 110, 483
AluI AGCT 2 cut(s) 110, 483
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 2 cut(s) 5, 254
AlwI GGATC 3 cut(s) 65, 271, 416
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 2 cut(s) 45, 130
ApeKI GCWGC 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 46, 259
AsuC2I CCSGG 2 cut(s) 116, 228
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 60, 184
BciVI GTATCC 1 cut(s) 508
BcnI CCSGG 2 cut(s) 116, 228
BcoDI GTCTC 2 cut(s) 5, 254
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 234
BfuI GTATCC 1 cut(s) 508
BglII AGATCT 1 cut(s) 290
BisI GCNGC 2 cut(s) 87, 160
BlsI GCNGC 2 cut(s) 88, 161
Bme1390I CCNGG 2 cut(s) 116, 228
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 46, 259
BmiI GGNNCC 3 cut(s) 100, 194, 261
BmrFI CCNGG 2 cut(s) 116, 228
BmsI GCATC 4 cut(s) 73, 219, 427, 482
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 116, 228
BsaBI GATNNNNATC 2 cut(s) 418, 496
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 3 cut(s) 226, 429, 468
BsaWI WCCGGW 3 cut(s) 73, 189, 200
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 243
Bse8I GATNNNNATC 2 cut(s) 418, 496
BseAI TCCGGA 1 cut(s) 73
BseDI CCNNGG 3 cut(s) 226, 429, 468
BseJI GATNNNNATC 2 cut(s) 418, 496
BseLI CCNNNNNNNGG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 2 cut(s) 47, 132
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 6 cut(s) 74, 116, 190, 201, 228, 244
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 5, 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 2 cut(s) 47, 132
Bsp1286I GDGCHC 1 cut(s) 330
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 4 cut(s) 70, 276, 290, 408
BspACI CCGC 1 cut(s) 159
BspANI GGCC 2 cut(s) 47, 132
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 3 cut(s) 100, 194, 261
BspPI GGATC 3 cut(s) 65, 271, 416
BsrFI RCCGGY 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 3 cut(s) 226, 429, 468
BssMI GATC 4 cut(s) 70, 276, 290, 408
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 429
Bst4CI ACNGT 3 cut(s) 40, 140, 472
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 468
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 4 cut(s) 73, 279, 293, 411
BstMAI GTCTC 2 cut(s) 5, 254
BstMBI GATC 4 cut(s) 70, 276, 290, 408
BstMWI GCNNNNNNNGC 2 cut(s) 159, 168
BstSCI CCNGG 2 cut(s) 114, 226
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 2 cut(s) 47, 132
BtgI CCRYGG 1 cut(s) 468
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 235
CfoI GCGC 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 46, 259
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 473
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 47, 110, 132, 483
CviKI_1 RGCY 4 cut(s) 47, 110, 132, 483
CviQI GTAC 1 cut(s) 473
DpnI GATC 4 cut(s) 72, 278, 292, 410
DpnII GATC 4 cut(s) 70, 276, 290, 408
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 1 cut(s) 94
FaiI YATR 4 cut(s) 92, 177, 185, 488
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 126
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 87, 160
Fsp4HI GCNGC 2 cut(s) 87, 160
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 232
GluI GCNGC 2 cut(s) 87, 160
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 47, 132
HapII CCGG 6 cut(s) 74, 116, 190, 201, 228, 244
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HpaII CCGG 6 cut(s) 74, 116, 190, 201, 228, 244
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 402, 468
Hpy188I TCNGA 1 cut(s) 413
Hpy188III TCNNGA 2 cut(s) 74, 216
Hpy8I GTNNAC 2 cut(s) 402, 468
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 316, 328
HpyCH4III ACNGT 3 cut(s) 40, 140, 472
HpyCH4V TGCA 2 cut(s) 210, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 168
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 231
Kpn2I TCCGGA 1 cut(s) 73
Kzo9I GATC 4 cut(s) 70, 276, 290, 408
LmnI GCTCC 3 cut(s) 68, 325, 431
LpnPI CCDG 6 cut(s) 87, 129, 203, 214, 241, 257
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 4 cut(s) 73, 219, 427, 482
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 40, 179
MalI GATC 4 cut(s) 72, 278, 292, 410
MboI GATC 4 cut(s) 70, 276, 290, 408
MboII GAAGA 2 cut(s) 244, 317
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 2 cut(s) 172, 345
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 5 cut(s) 70, 143, 360, 379, 511
MroI TCCGGA 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 2 cut(s) 344, 416
MspI CCGG 6 cut(s) 74, 116, 190, 201, 228, 244
MspR9I CCNGG 2 cut(s) 116, 228
MwoI GCNNNNNNNGC 2 cut(s) 159, 168
NciI CCSGG 2 cut(s) 116, 228
NdeII GATC 4 cut(s) 70, 276, 290, 408
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 3 cut(s) 100, 194, 261
NmuCI GTSAC 2 cut(s) 40, 179
PdmI GAANNNNTTC 1 cut(s) 338
PkrI GCNGC 2 cut(s) 88, 161
PspN4I GGNNCC 3 cut(s) 100, 194, 261
PspPI GGNCC 2 cut(s) 46, 259
PsuI RGATCY 1 cut(s) 290
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
SaqAI TTAA 2 cut(s) 344, 416
SatI GCNGC 2 cut(s) 87, 160
Sau3AI GATC 4 cut(s) 70, 276, 290, 408
Sau96I GGNCC 2 cut(s) 46, 259
ScrFI CCNGG 2 cut(s) 116, 228
SduI GDGCHC 1 cut(s) 330
SetI ASST 5 cut(s) 81, 112, 355, 365, 485
SfaNI GCATC 4 cut(s) 73, 219, 427, 482
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 2 cut(s) 172, 345
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 114, 226
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 40, 140, 472
TasI AATT 2 cut(s) 172, 345
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 344, 416
Tru9I TTAA 2 cut(s) 344, 416
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 2 cut(s) 40, 179
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 2 cut(s) 40, 179
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 2 cut(s) 46, 272
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.