Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Forward (+)

10167584 .. 10168387

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG121800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTGAAGTTTCTACTGGAGCATCTGGAGAATTCGATTTTGGATCTACTCCGACGAGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGAAGTATACACCGGCCGCGGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCTCCGATGGGGCTAATTGCCTTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCATTGTAAACGTGAATTTTTGTTGTGCCAAGAAGATTCGAGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

110

Amino Acids

12.55

Weight (kDa)

6.94

Isoelectric Point (pI)

20.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 71	3e-13	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	114
AciI	CCGC	2 cut(s)	112, 114
AclWI	GGATC	1 cut(s)	51
AcoI	YGGCCR	2 cut(s)	109, 264
AcsI	RAATTY	2 cut(s)	31, 298
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AlwI	GGATC	1 cut(s)	51
AoxI	GGCC	3 cut(s)	69, 109, 264
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	2 cut(s)	31, 298
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	16, 289
BalI	TGGCCA	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	111, 214, 275
BceAI	ACGGC	1 cut(s)	56
BcgI	CGANNNNNNTGC	4 cut(s)	45, 79, 241, 275
BisI	GCNGC	2 cut(s)	112, 213
BlsI	GCNGC	2 cut(s)	113, 214
BmgT120I	GGNCC	1 cut(s)	69
BmsI	GCATC	1 cut(s)	31
BoxI	GACNNNNGTC	1 cut(s)	58
BpmI	CTGGAG	2 cut(s)	38, 47
BsaJI	CCNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	21
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	71, 111, 266
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	108
BsnI	GGCC	3 cut(s)	71, 111, 266
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	2 cut(s)	112, 114
BspANI	GGCC	3 cut(s)	71, 111, 266
BspFNI	CGCG	1 cut(s)	114
BspPI	GGATC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	43
BssNAI	GTATAC	1 cut(s)	103
Bst1107I	GTATAC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	271
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMCI	CGRYCG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	151
BstPAI	GACNNNNGTC	1 cut(s)	58
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	43
BstZ17I	GTATAC	1 cut(s)	103
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	71, 111, 266
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	264
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	69
Cfr42I	CCGCGG	1 cut(s)	115
CviAII	CATG	5 cut(s)	142, 148, 179, 191, 241
CviJI	RGCY	6 cut(s)	71, 111, 184, 212, 226, 266
CviKI_1	RGCY	6 cut(s)	71, 111, 184, 212, 226, 266
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EaeI	YGGCCR	2 cut(s)	109, 264
EagI	CGGCCG	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	109
Eco52I	CGGCCG	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	31
FaeI	CATG	5 cut(s)	145, 151, 182, 194, 244
FaiI	YATR	6 cut(s)	103, 143, 149, 180, 192, 242
FatI	CATG	5 cut(s)	141, 147, 178, 190, 240
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	112, 213
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	112, 213
GluI	GCNGC	2 cut(s)	112, 213
GsaI	CCCAGC	1 cut(s)	70
GsuI	CTGGAG	2 cut(s)	38, 47
HaeIII	GGCC	3 cut(s)	71, 111, 266
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	5 cut(s)	145, 151, 182, 194, 244
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	255, 319
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	16, 289
Hpy166II	GTNNAC	3 cut(s)	103, 163, 292
Hpy188I	TCNGA	2 cut(s)	53, 219
Hpy188III	TCNNGA	2 cut(s)	26, 323
Hpy8I	GTNNAC	3 cut(s)	103, 163, 292
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	271
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	5 cut(s)	145, 151, 182, 194, 244
KspI	CCGCGG	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	19, 220
LpnPI	CCDG	5 cut(s)	2, 11, 52, 121, 248
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	294
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	3 cut(s)	97, 100, 328
MflI	RGATCY	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	5 cut(s)	31, 186, 228, 298, 326
MluNI	TGGCCA	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	2 cut(s)	50, 151
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MslI	CAYNNNNRTG	2 cut(s)	146, 272
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	114
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	5 cut(s)	145, 151, 182, 194, 244
NspI	RCATGY	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	255, 319
PkrI	GCNGC	2 cut(s)	113, 214
PshAI	GACNNNNGTC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	43
RseI	CAYNNNNRTG	2 cut(s)	146, 272
SacII	CCGCGG	1 cut(s)	115
SatI	GCNGC	2 cut(s)	112, 213
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	69
SetI	ASST	3 cut(s)	162, 186, 297
SfaNI	GCATC	1 cut(s)	31
Sfr303I	CCGCGG	1 cut(s)	115
SgrBI	CCGCGG	1 cut(s)	115
SmiMI	CAYNNNNRTG	2 cut(s)	146, 272
Sse9I	AATT	5 cut(s)	31, 186, 228, 298, 326
SsiI	CCGC	2 cut(s)	112, 114
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	35, 322
TasI	AATT	5 cut(s)	31, 186, 228, 298, 326
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	255, 319
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	65, 158, 179, 226
XapI	RAATTY	2 cut(s)	31, 298
XceI	RCATGY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.