Rroxscaffold_6G00405550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000640
Physical Location & Seq
Forward (+)
28009887 .. 28015203
5317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405550.1

Sequence Viewer

Length: 750 bp
ATGAGGGTGGTGAGGGAGATGAGCAAGGATCCGATGATGATGATGAAGGAGTTGTGTCCTAAAAACAATCATTTTGATGAGGAGACTACAAGCAATCCAAGGTGTTTCAAGGTGGAGGAAACACACATAAGGAGAGATCAAGGAAAGGAACTTTGGTGGTTCACTTGGATCGGATTGAGATCACGCTCCAAGGTGCACTACTCTTGTCGTCCATTCTCACCTCACCGAATCATCCATCACCCTTCTTCATCTTACCTGCTCATCGATCTCACATTCTCACTCATTCGGAAAAAATGGCCGAACCAGGTGGCTCGACAAGAGGAGTTGGTGCTCGGTGCCCGAGAAGTTTCAGCTTCATGGAGCCATGTTGGCTTCCGTAGTTCGGCTATGCCGGTTTCCATGTCATCTCTAGATTTGCTCTCAATATGGGCATTTCTAAGCTTGTCTTTCCCGTTTACCGAACATCATCGCTTTGCTTCTCCTCCCGCCGTTTGCCTACTATCCGGAAAAGAAGGACAGGCCTCCTATCAATCTCAACTTTCTCGTTCGCTTCTTTTACCTTGCGCTGATCGGAATAACAACAAGCCAAGGATTCTACTTGCCGGGATTAGACAACACATCACCCGCCTTTGCTTCCGCTATACAAAACTCGTCCAGCCCATTACCTTTCTCATGGCGGTCATACTCGAATCGAGCAAGCAAGACCGAACCGCAAGGACGGTATTGCAAAGGGTAAGAGCCGGACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.91

Weight (kDa)

10.22

Isoelectric Point (pI)

60.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 335
AccIII TCCGGA 1 cut(s) 503
AciI CCGC 5 cut(s) 486, 625, 637, 677, 711
AclWI GGATC 3 cut(s) 23, 36, 176
AcoI YGGCCR 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 136, 168
AluBI AGCT 2 cut(s) 353, 441
AluI AGCT 2 cut(s) 353, 441
Alw21I GWGCWC 2 cut(s) 198, 333
Alw26I GTCTC 1 cut(s) 77
Alw44I GTGCAC 1 cut(s) 194
AlwI GGATC 3 cut(s) 23, 36, 176
Ama87I CYCGRG 1 cut(s) 339
Aor13HI TCCGGA 1 cut(s) 503
AoxI GGCC 2 cut(s) 296, 519
ApaLI GTGCAC 1 cut(s) 194
AspLEI GCGC 1 cut(s) 566
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 5 cut(s) 22, 210, 215, 230, 613
AvaI CYCGRG 1 cut(s) 339
BaeGI GKGCMC 2 cut(s) 198, 340
BamHI GGATCC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 335
Bbv12I GWGCWC 2 cut(s) 198, 333
BccI CCATC 1 cut(s) 243
BceAI ACGGC 1 cut(s) 473
BciT130I CCWGG 1 cut(s) 305
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 410, 748
BfuAI ACCTGC 1 cut(s) 264
BglI GCCNNNNNGGC 1 cut(s) 369
Bme1390I CCNGG 2 cut(s) 305, 604
BmeT110I CYCGRG 1 cut(s) 339
BmiI GGNNCC 3 cut(s) 30, 337, 362
BmrFI CCNGG 2 cut(s) 305, 604
BpuMI CCSGG 1 cut(s) 604
Bsa29I ATCGAT 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 98, 189, 587
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse118I RCCGGY 1 cut(s) 391
Bse8I GATNNNNATC 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 503
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 98, 189, 587
BseGI GGATG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 382
BseRI GAGGAG 3 cut(s) 95, 335, 471
BseSI GKGCMC 2 cut(s) 198, 340
BshFI GGCC 2 cut(s) 298, 521
BshNI GGYRCC 1 cut(s) 335
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 198, 333
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 4 cut(s) 392, 504, 603, 741
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 2 cut(s) 298, 521
BsoBI CYCGRG 1 cut(s) 339
Bsp1286I GDGCHC 3 cut(s) 198, 333, 340
Bsp13I TCCGGA 1 cut(s) 503
Bsp143I GATC 6 cut(s) 28, 136, 168, 179, 265, 568
BspACI CCGC 5 cut(s) 486, 625, 637, 677, 711
BspANI GGCC 2 cut(s) 298, 521
BspDI ATCGAT 1 cut(s) 264
BspEI TCCGGA 1 cut(s) 503
BspLI GGNNCC 3 cut(s) 30, 337, 362
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 3 cut(s) 23, 36, 176
BspT107I GGYRCC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 3 cut(s) 98, 189, 587
BssMI GATC 6 cut(s) 28, 136, 168, 179, 265, 568
BssT1I CCWWGG 3 cut(s) 98, 189, 587
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 721
BstC8I GCNNGC 1 cut(s) 698
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 6 cut(s) 31, 139, 171, 182, 268, 571
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 6 cut(s) 28, 136, 168, 179, 265, 568
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 303, 602
BstSLI GKGCMC 2 cut(s) 198, 340
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 2 cut(s) 298, 521
BsuTUI ATCGAT 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 452
BtsCI GGATG 1 cut(s) 231
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 698
CfoI GCGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 391
ClaI ATCGAT 1 cut(s) 264
CsiI ACCWGGT 1 cut(s) 303
CviAII CATG 4 cut(s) 357, 365, 400, 673
DdeI CTNAG 1 cut(s) 437
DpnI GATC 6 cut(s) 30, 138, 170, 181, 267, 570
DpnII GATC 6 cut(s) 28, 136, 168, 179, 265, 568
EaeI YGGCCR 1 cut(s) 296
Eco130I CCWWGG 3 cut(s) 98, 189, 587
Eco147I AGGCCT 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 3 cut(s) 98, 189, 587
ErhI CCWWGG 3 cut(s) 98, 189, 587
FaeI CATG 4 cut(s) 360, 368, 403, 676
FaiI YATR 9 cut(s) 128, 358, 366, 389, 401, 427, 642, 674, 683
FalI AAGNNNNNCTT 2 cut(s) 430, 462
FatI CATG 4 cut(s) 356, 364, 399, 672
FauI CCCGC 2 cut(s) 493, 632
FokI GGATG 1 cut(s) 218
FspBI CTAG 2 cut(s) 410, 748
GlaI GCGC 1 cut(s) 565
HaeIII GGCC 2 cut(s) 298, 521
HapII CCGG 4 cut(s) 392, 504, 603, 741
HhaI GCGC 1 cut(s) 566
Hin1II CATG 4 cut(s) 360, 368, 403, 676
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 3 cut(s) 228, 592, 689
HpaII CCGG 4 cut(s) 392, 504, 603, 741
HphI GGTGA 5 cut(s) 22, 210, 215, 230, 613
Hpy166II GTNNAC 3 cut(s) 162, 196, 456
Hpy188I TCNGA 4 cut(s) 33, 173, 288, 573
Hpy188III TCNNGA 2 cut(s) 410, 504
Hpy8I GTNNAC 3 cut(s) 162, 196, 456
HpyAV CCTTC 3 cut(s) 40, 252, 506
HpyCH4III ACNGT 1 cut(s) 721
HpyCH4V TGCA 2 cut(s) 196, 727
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 1 cut(s) 437
Hsp92II CATG 4 cut(s) 360, 368, 403, 676
HspAI GCGC 1 cut(s) 564
Kpn2I TCCGGA 1 cut(s) 503
Kzo9I GATC 6 cut(s) 28, 136, 168, 179, 265, 568
LmnI GCTCC 2 cut(s) 191, 360
LpnPI CCDG 8 cut(s) 269, 290, 317, 405, 503, 517, 616, 668
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 2 cut(s) 410, 748
MalI GATC 6 cut(s) 30, 138, 170, 181, 267, 570
MboI GATC 6 cut(s) 28, 136, 168, 179, 265, 568
MboII GAAGA 1 cut(s) 237
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 3 cut(s) 198, 333, 340
MnlI CCTC 7 cut(s) 6, 73, 109, 231, 313, 492, 532
MroI TCCGGA 1 cut(s) 503
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 4 cut(s) 392, 504, 603, 741
MspR9I CCNGG 2 cut(s) 305, 604
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 369
NciI CCSGG 1 cut(s) 604
NdeII GATC 6 cut(s) 28, 136, 168, 179, 265, 568
NlaIII CATG 4 cut(s) 360, 368, 403, 676
NlaIV GGNNCC 3 cut(s) 30, 337, 362
PceI AGGCCT 1 cut(s) 521
PfeI GAWTC 3 cut(s) 228, 592, 689
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 3 cut(s) 30, 337, 362
PsuI RGATCY 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 75
Sau3AI GATC 6 cut(s) 28, 136, 168, 179, 265, 568
ScrFI CCNGG 2 cut(s) 305, 604
SduI GDGCHC 3 cut(s) 198, 333, 340
SexAI ACCWGGT 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 75
SseBI AGGCCT 1 cut(s) 521
SsiI CCGC 5 cut(s) 486, 625, 637, 677, 711
SspMI CTAG 2 cut(s) 410, 748
StuI AGGCCT 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 303, 602
StyI CCWWGG 3 cut(s) 98, 189, 587
TaaI ACNGT 1 cut(s) 721
TaqI TCGA 4 cut(s) 264, 313, 687, 692
TaqII GACCGA 1 cut(s) 720
TfiI GAWTC 3 cut(s) 228, 592, 689
TspDTI ATGAA 3 cut(s) 59, 237, 345
TspGWI ACGGA 1 cut(s) 365
VneI GTGCAC 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 409
XspI CTAG 2 cut(s) 410, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.