Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Forward (+)

38066329 .. 38069369

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG171700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTGAAGTTTATGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCTCGGATGGATAATGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGCTGTGTCAAGAAGATTCGAGAATTGTGAACAAATTTCAGGCAGAAACAGGGTCTCCATGCATAGCAGCCCACATTTTCAGGATTGAAGGAGCGGTTGCTGCTCATAATTTTGCTCCTGTGTTCATAATCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTTTGGGCAGGTTGAAATTAACATCTTTCTCTGATCTTTTTCAGTCTTGGAGAATATTACTTGCAGTCATGACTATGATCTATGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

142

Amino Acids

15.89

Weight (kDa)

6.57

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	336
AccBSI	CCGCTC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	2 cut(s)	106, 266
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	167, 206
AgsI	TTSAA	2 cut(s)	260, 352
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	2 cut(s)	66, 133
ApeKI	GCWGC	2 cut(s)	239, 272
ApoI	RAATTY	2 cut(s)	167, 206
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	16, 158
BalI	TGGCCA	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	251, 259
BccI	CCATC	3 cut(s)	108, 144, 323
BceAI	ACGGC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	2 cut(s)	240, 273
BlsI	GCNGC	2 cut(s)	241, 274
BmgT120I	GGNCC	1 cut(s)	66
BmsI	GCATC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	38, 47
BsaBI	GATNNNNATC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	119
BseJI	GATNNNNATC	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	251, 259
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	68, 135
BsiSI	CCGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	68, 135
Bso31I	GGTCTC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	334, 370, 414
BspACI	CCGC	2 cut(s)	106, 266
BspANI	GGCC	2 cut(s)	68, 135
BspHI	TCATGA	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	231
BsrBI	CCGCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	334, 370, 414
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	119
BstKTI	GATC	3 cut(s)	337, 373, 417
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	3 cut(s)	334, 370, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	251, 259
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	68, 135
BtsCI	GGATG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	133
CciI	TCATGA	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	66
CviAII	CATG	2 cut(s)	231, 406
CviJI	RGCY	3 cut(s)	68, 135, 242
CviKI_1	RGCY	3 cut(s)	68, 135, 242
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	3 cut(s)	336, 372, 416
DpnII	GATC	3 cut(s)	334, 370, 414
EaeI	YGGCCR	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	236
FaeI	CATG	2 cut(s)	234, 409
FaiI	YATR	9 cut(s)	14, 100, 232, 236, 279, 299, 407, 413, 420
FatI	CATG	2 cut(s)	230, 405
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	240, 273
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	240, 273
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	2 cut(s)	240, 273
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	2 cut(s)	38, 47
HaeIII	GGCC	2 cut(s)	68, 135
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	234, 409
HinfI	GANTC	2 cut(s)	124, 188
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	16, 158
Hpy166II	GTNNAC	3 cut(s)	100, 161, 202
Hpy188I	TCNGA	2 cut(s)	113, 370
Hpy188III	TCNNGA	6 cut(s)	26, 182, 192, 253, 326, 406
Hpy8I	GTNNAC	3 cut(s)	100, 161, 202
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	234, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	234, 409
Kzo9I	GATC	3 cut(s)	334, 370, 414
LmnI	GCTCC	3 cut(s)	19, 263, 292
Lsp1109I	GCAGC	2 cut(s)	251, 259
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	163
MalI	GATC	3 cut(s)	336, 372, 416
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	3 cut(s)	334, 370, 414
MboII	GAAGA	3 cut(s)	94, 97, 197
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	6 cut(s)	167, 195, 206, 280, 353, 422
MluNI	TGGCCA	1 cut(s)	135
MnlI	CCTC	1 cut(s)	119
Mox20I	TGGCCA	1 cut(s)	135
Mph1103I	ATGCAT	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	2 cut(s)	141, 410
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	3 cut(s)	334, 370, 414
NlaIII	CATG	2 cut(s)	234, 409
NsiI	ATGCAT	1 cut(s)	236
PagI	TCATGA	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	124, 188
PkrI	GCNGC	2 cut(s)	241, 274
PspFI	CCCAGC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	141, 410
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	240, 273
Sau3AI	GATC	3 cut(s)	334, 370, 414
Sau96I	GGNCC	1 cut(s)	66
SetI	ASST	2 cut(s)	166, 350
SfaNI	GCATC	1 cut(s)	31
SmiMI	CAYNNNNRTG	2 cut(s)	141, 410
Sse9I	AATT	6 cut(s)	167, 195, 206, 280, 353, 422
SsiI	CCGC	2 cut(s)	106, 266
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	191
TasI	AATT	6 cut(s)	167, 195, 206, 280, 353, 422
TfiI	GAWTC	2 cut(s)	124, 188
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	161
TseI	GCWGC	2 cut(s)	239, 272
TspDTI	ATGAA	2 cut(s)	62, 286
TspRI	CASTG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	167, 206
XbaI	TCTAGA	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.