Rroxscaffold_1G00022610

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000640
Physical Location & Seq
Reverse (-)
27953043 .. 27961424
8382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022610.1

Sequence Viewer

Length: 447 bp
ATGCTCCGGTCGAAACTTCACCGTCGGAGCAGATCGAAAATTGATTTCTCCGGATGCTCCAGCAAAAACTTCACCATCGGAGTAGATCCAAACTCGATTAAGACTGATGCTCTGGAAAAAACTTCACCAAGATTATGGTGGCACGCTCATAGTGAATGGGCTAGAGCTAGTGTTCATGGTGCCATTGTTGTGATGCCGCTAAATGAAACAGGGTTTCCTTTTCCAAAACCAGATGGAGAGGAAATCATTGGGCCTCTTTATATAGAGGATTACAAGCATAAAGATAGAGTTGTACATGGAAACATAATCAGAAGATTACAAGCACAAGAAGGAGTTCTTAATCTAAGGTGCTTCAAGGTGGAGGAGACACACACAAGGAGAGATCAAGGAGAGGAACTTTGGTGGTTCACTTGGATCGGATTAAAATCACGCTCCAAGGGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

148

Amino Acids

17.18

Weight (kDa)

9.39

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 1 cut(s) 197
AclWI GGATC 2 cut(s) 80, 422
AfaI GTAC 1 cut(s) 294
AgsI TTSAA 1 cut(s) 355
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 2 cut(s) 80, 422
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 3 cut(s) 11, 64, 117
BanI GGYRCC 1 cut(s) 179
BccI CCATC 2 cut(s) 83, 227
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 2 cut(s) 162, 168
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 181
BmsI GCATC 3 cut(s) 44, 97, 183
BpmI CTGGAG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 435
BsaWI WCCGGW 2 cut(s) 6, 50
Bse8I GATNNNNATC 1 cut(s) 424
BseAI TCCGGA 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 1 cut(s) 59
BseJI GATNNNNATC 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 377
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 7, 51
BsmAI GTCTC 1 cut(s) 359
BsnI GGCC 1 cut(s) 253
Bsp13I TCCGGA 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 292
Bsp143I GATC 4 cut(s) 32, 85, 382, 414
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 253
BspEI TCCGGA 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 2 cut(s) 80, 422
BspT107I GGYRCC 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 4 cut(s) 32, 85, 382, 414
BssT1I CCWWGG 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 59
BstKTI GATC 4 cut(s) 35, 88, 385, 417
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 4 cut(s) 32, 85, 382, 414
BstMCI CGRYCG 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 135
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 293
CviAII CATG 2 cut(s) 176, 296
CviJI RGCY 3 cut(s) 161, 167, 253
CviKI_1 RGCY 3 cut(s) 161, 167, 253
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 344
DpnI GATC 4 cut(s) 34, 87, 384, 416
DpnII GATC 4 cut(s) 32, 85, 382, 414
Eco130I CCWWGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 2 cut(s) 179, 299
FaiI YATR 8 cut(s) 136, 150, 177, 261, 263, 279, 297, 305
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 2 cut(s) 175, 295
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 162, 168
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 1 cut(s) 253
HapII CCGG 2 cut(s) 7, 51
Hin1II CATG 2 cut(s) 179, 299
HpaII CCGG 2 cut(s) 7, 51
HphI GGTGA 3 cut(s) 11, 64, 117
Hpy166II GTNNAC 1 cut(s) 408
Hpy188I TCNGA 4 cut(s) 27, 80, 311, 419
Hpy188III TCNNGA 2 cut(s) 51, 113
Hpy8I GTNNAC 1 cut(s) 408
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 344
Hsp92II CATG 2 cut(s) 179, 299
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 4 cut(s) 32, 85, 382, 414
LmnI GCTCC 4 cut(s) 9, 27, 62, 437
LpnPI CCDG 6 cut(s) 20, 64, 73, 98, 195, 243
LweI GCATC 3 cut(s) 44, 97, 183
MaeI CTAG 2 cut(s) 162, 168
MalI GATC 4 cut(s) 34, 87, 384, 416
MboI GATC 4 cut(s) 32, 85, 382, 414
MboII GAAGA 1 cut(s) 324
MflI RGATCY 1 cut(s) 85
MluCI AATT 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 5 cut(s) 232, 259, 264, 355, 385
MroI TCCGGA 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 3 cut(s) 99, 339, 422
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 2 cut(s) 7, 51
NdeII GATC 4 cut(s) 32, 85, 382, 414
NlaIII CATG 2 cut(s) 179, 299
NlaIV GGNNCC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 333
PkrI GCNGC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 251
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 3 cut(s) 99, 339, 422
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 4 cut(s) 32, 85, 382, 414
Sau96I GGNCC 1 cut(s) 251
SetI ASST 3 cut(s) 169, 350, 360
SfaNI GCATC 3 cut(s) 44, 97, 183
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 1 cut(s) 39
SsiI CCGC 1 cut(s) 197
SspMI CTAG 2 cut(s) 162, 168
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 3 cut(s) 11, 35, 95
TasI AATT 1 cut(s) 39
TatI WGTACW 1 cut(s) 292
TauI GCSGC 1 cut(s) 199
Tru1I TTAA 3 cut(s) 99, 339, 422
Tru9I TTAA 3 cut(s) 99, 339, 422
TspDTI ATGAA 2 cut(s) 164, 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 2 cut(s) 162, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.