Rh2AG250300

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000640
Physical Location & Seq
Forward (+)
28334934 .. 28342810
7877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG250300.1

Sequence Viewer

Length: 363 bp
ATGGTGAAGTTTATGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCTCGGATGGCCTGTTGCTCAAAACATAAGGGTAGATCATCATCTTGGTGGTGGGCATTGGTTTGCTGCGGGTCTCTCTCCTAATTACGTTGCTTCAGAGCCATTACCAGTTTACGAGGGAACAGTAGGCAAGTATCCTGAGGCCCAGAAGGGCTATTTATTAGAAGAGAATGTTCTACTTCGTTGTGCTGCCAATGAACAAGTGTCGACGTGTTGTCTAACTTACATGCATTTAAAGAGAATAAAACATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009267 GO:0009506 GO:0009605 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019222 GO:0019538 GO:0019932 GO:0019933 GO:0019935 GO:0023051 GO:0023052 GO:0023056 GO:0030054 GO:0030587 GO:0031152 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0033554 GO:0033993 GO:0035556 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0042493 GO:0042594 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045472 GO:0046677 GO:0046777 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051409 GO:0051703 GO:0051704 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0071496 GO:0071704 GO:0090702 GO:0097305 GO:0097327 GO:0098630 GO:0098743 GO:0099120 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901654 GO:1901700 GO:1904643 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

120

Amino Acids

13.38

Weight (kDa)

7.66

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 99, 314
AciI CCGC 2 cut(s) 106, 176
AcuI CTGAAG 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 317
AhdI GACNNNNNGTC 1 cut(s) 321
AjiI CACGTC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 185
AoxI GGCC 3 cut(s) 66, 116, 249
ApeKI GCWGC 2 cut(s) 173, 296
AspS9I GGNCC 2 cut(s) 66, 250
AsuHPI GGTGA 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 246
BbvI GCAGC 2 cut(s) 160, 283
BccI CCATC 1 cut(s) 108
BceAI ACGGC 1 cut(s) 53
BciVI GTATCC 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 185
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 2 cut(s) 174, 297
BlsI GCNGC 2 cut(s) 175, 298
BmeRI GACNNNNNGTC 1 cut(s) 321
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 66, 250
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 38, 47
BsaBI GATNNNNATC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 215
Bse21I CCTNAGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 119
BseJI GATNNNNATC 1 cut(s) 147
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 160, 283
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 3 cut(s) 68, 118, 251
BsiSI CCGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 3 cut(s) 68, 118, 251
Bso31I GGTCTC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 2 cut(s) 106, 176
BspANI GGCC 3 cut(s) 68, 118, 251
BspCNI CTCAG 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 142
BssNAI GTATAC 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 1 cut(s) 142
BstNSI RCATGY 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 160, 283
BstZ17I GTATAC 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 246
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 3 cut(s) 68, 118, 251
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 66, 250
CviAII CATG 1 cut(s) 334
CviJI RGCY 5 cut(s) 68, 118, 208, 251, 261
CviKI_1 RGCY 5 cut(s) 68, 118, 208, 251, 261
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
DraI TTTAAA 1 cut(s) 342
DriI GACNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 267
Eam1105I GACNNNNNGTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 339
FaeI CATG 1 cut(s) 337
FaiI YATR 5 cut(s) 14, 100, 134, 335, 361
FatI CATG 1 cut(s) 333
FauI CCCGC 2 cut(s) 113, 169
FblI GTMKAC 2 cut(s) 99, 314
Fnu4HI GCNGC 2 cut(s) 174, 297
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 174, 297
GluI GCNGC 2 cut(s) 174, 297
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 2 cut(s) 38, 47
HaeIII GGCC 3 cut(s) 68, 118, 251
HapII CCGG 1 cut(s) 93
Hin1II CATG 1 cut(s) 337
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 100, 220, 315
Hpy188I TCNGA 2 cut(s) 113, 205
Hpy188III TCNNGA 2 cut(s) 26, 245
Hpy8I GTNNAC 3 cut(s) 100, 220, 315
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 2 cut(s) 195, 317
HpyCH4V TGCA 1 cut(s) 337
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 2 cut(s) 195, 317
Hsp92II CATG 1 cut(s) 337
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 9 cut(s) 2, 11, 21, 49, 106, 132, 228, 258, 266
Lsp1109I GCAGC 2 cut(s) 160, 283
LweI GCATC 1 cut(s) 31
MaeII ACGT 2 cut(s) 195, 317
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 3 cut(s) 94, 97, 284
MluCI AATT 1 cut(s) 190
MnlI CCTC 3 cut(s) 119, 217, 241
Mph1103I ATGCAT 1 cut(s) 339
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 1 cut(s) 93
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 339
NspI RCATGY 1 cut(s) 337
PkrI GCNGC 2 cut(s) 175, 298
PspFI CCCAGC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 66, 250
RseI CAYNNNNRTG 1 cut(s) 153
SalI GTCGAC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 2 cut(s) 174, 297
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 66, 250
SetI ASST 2 cut(s) 198, 320
SfaNI GCATC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 1 cut(s) 190
SsiI CCGC 2 cut(s) 106, 176
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 2 cut(s) 198, 320
TaqI TCGA 1 cut(s) 314
TasI AATT 1 cut(s) 190
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TseI GCWGC 2 cut(s) 173, 296
TspDTI ATGAA 2 cut(s) 62, 318
XceI RCATGY 1 cut(s) 337
XmiI GTMKAC 2 cut(s) 99, 314
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.