Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Reverse (-)

27896247 .. 27897945

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTAAAGTTTCTGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGAAGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGTCGGAGTATACACCCGCCGCAGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGTTGCTCCGATGGTAAACTGGGCTAATTGCCCTCATCATGCTTGTAGAAAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGTTGTGCCAAGAAGATTCGAGAATTGTGAACAAGCTCAGTTCATTGATCAAGACCCTTTGCAGCAGCAAGTGCAATTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

130

Amino Acids

14.98

Weight (kDa)

8.48

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 104	1.1e-29	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	2 cut(s)	106, 109
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	302
AluBI	AGCT	2 cut(s)	181, 343
AluI	AGCT	2 cut(s)	181, 343
AoxI	GGCC	2 cut(s)	66, 268
ApeKI	GCWGC	2 cut(s)	369, 372
ApoI	RAATTY	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	381, 384
BccI	CCATC	3 cut(s)	108, 211, 279
BceAI	ACGGC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	354
BisI	GCNGC	3 cut(s)	109, 370, 373
BlsI	GCNGC	3 cut(s)	110, 371, 374
BmgT120I	GGNCC	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	235
BpmI	CTGGAG	2 cut(s)	38, 47
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	358
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	381, 384
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	68, 270
BsnI	GGCC	2 cut(s)	68, 270
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	2 cut(s)	106, 109
BspANI	GGCC	2 cut(s)	68, 270
BspCNI	CTCAG	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	354
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	275, 344
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	381, 384
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	68, 270
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	66
CviAII	CATG	5 cut(s)	139, 145, 176, 188, 245
CviJI	RGCY	5 cut(s)	68, 181, 230, 270, 343
CviKI_1	RGCY	5 cut(s)	68, 181, 230, 270, 343
DdeI	CTNAG	2 cut(s)	275, 344
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	1 cut(s)	268
FaeI	CATG	5 cut(s)	142, 148, 179, 191, 248
FaiI	YATR	6 cut(s)	100, 140, 146, 177, 189, 246
FatI	CATG	5 cut(s)	138, 144, 175, 187, 244
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	109, 370, 373
Fsp4HI	GCNGC	3 cut(s)	109, 370, 373
GluI	GCNGC	3 cut(s)	109, 370, 373
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	2 cut(s)	38, 47
HaeIII	GGCC	2 cut(s)	68, 270
Hin1II	CATG	5 cut(s)	142, 148, 179, 191, 248
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	259, 323
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	5 cut(s)	100, 160, 223, 296, 337
Hpy188I	TCNGA	2 cut(s)	95, 216
Hpy188III	TCNNGA	3 cut(s)	26, 327, 358
Hpy8I	GTNNAC	5 cut(s)	100, 160, 223, 296, 337
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	148, 369, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	2 cut(s)	275, 344
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	5 cut(s)	142, 148, 179, 191, 248
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	19, 217
LpnPI	CCDG	6 cut(s)	2, 11, 21, 49, 211, 252
Lsp1109I	GCAGC	2 cut(s)	381, 384
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	298
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	3 cut(s)	94, 97, 332
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	5 cut(s)	183, 232, 302, 330, 382
MluNI	TGGCCA	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	2 cut(s)	148, 249
Mox20I	TGGCCA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	143, 276
Msp20I	TGGCCA	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	5 cut(s)	142, 148, 179, 191, 248
NspI	RCATGY	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	259, 323
PkrI	GCNGC	3 cut(s)	110, 371, 374
PspFI	CCCAGC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	143, 276
SatI	GCNGC	3 cut(s)	109, 370, 373
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	66
SetI	ASST	4 cut(s)	159, 183, 301, 345
SfaNI	GCATC	1 cut(s)	31
SmiMI	CAYNNNNRTG	2 cut(s)	143, 276
Sse9I	AATT	5 cut(s)	183, 232, 302, 330, 382
SsiI	CCGC	2 cut(s)	106, 109
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	326
TasI	AATT	5 cut(s)	183, 232, 302, 330, 382
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	259, 323
TscAI	CASTG	1 cut(s)	296
TseI	GCWGC	2 cut(s)	369, 372
TspDTI	ATGAA	5 cut(s)	62, 155, 176, 339, 377
TspRI	CASTG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.