Rroxscaffold_1G00032940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000640
Physical Location & Seq
Forward (+)
47336040 .. 47357975
21936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032940.1

Sequence Viewer

Length: 939 bp
ATGGGGAGGATCGGCCGTGCATCGCGGAAAAGTGGTTTTCCGCCGGGTCGGGTTTTCATTTCGGGGAAGGGCTTCGATCCGGTCTCGGGGGCAGCGGCGGAGCAAAGCGATAGCATGGGGCGGTTGGGCGGCCCGGGTCCGATGGTGGTGGAGGCCGGTCCGGGGTCGGGGGAGGCGGAGGGACGATTTCCAGCCGGGTCGGGTCCGAAGAGGCACGGGAGAGAGAAAAGACGCCGGGGGGGGACTGAGGAGACTGTAAGCACGAGAAAGAGTTCTCAATCCAAGGTCCTTCAAGATGGAGGAAACACACACAAGGAGAGATCAAGGAGAGGAACTTTGGTGGTTCACTTGGATCGGATTGAGATCACGCTCCAAGGATTACCATATATATATGCAATCTTGTGCTCAGTGGTTAGGGGCAAAGTTTTCGTGCAGCAGGTCAAGCAACCTTCACTCTCTCTCCCTACACGCACTCAACGGGAGGAGGTTGATCTGCCTTTGACCACACAAGTCGAACCGAGCCAAGCTCCAATGGGAGCCCGAGTCCAAGACCACCACCCATCACCTCCGGCCTCCACACACATACCTCAAGATCATCTCGGCGCTACTCTAGAATCCTTCGATCACCAGCCACGTAGCGAGCTCAAGTCGCTACTAGAACCGGAGATCTGCTGCCAAACGGTTGCGAAGCGTACGTACTACCGGAGAGTAGTACTCTCGACGCAGCAGACAAATTGGTTAGGGCCTTCAAACGCCGCTACGATGCCATCACCTTCGGCTCTTCTTATCGAGAAAACAGCTGCTCTCATTGACTTGGTGAAGACAGCGGTGACTCACCGGAACGTATACTCGATCTCTCATCTTTTCTTAGTGCTGCCAAATGCTACTTCCTCTATGCGATTCAGCTTTCTTTGGTTCTACTCAACTTCGCTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

34.0

Weight (kDa)

9.96

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 846
AccII CGCG 1 cut(s) 25
AciI CCGC 9 cut(s) 25, 41, 95, 98, 121, 129, 176, 756, 827
AclWI GGATC 3 cut(s) 17, 71, 360
AcoI YGGCCR 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 232
AfaI GTAC 3 cut(s) 694, 698, 714
AfiI CCNNNNNNNGG 3 cut(s) 86, 162, 167
AgsI TTSAA 2 cut(s) 293, 750
AjuI GAANNNNNNNTTGG 2 cut(s) 871, 903
AluBI AGCT 4 cut(s) 527, 643, 800, 906
AluI AGCT 4 cut(s) 527, 643, 800, 906
Alw21I GWGCWC 2 cut(s) 407, 645
Alw26I GTCTC 2 cut(s) 88, 245
AlwI GGATC 3 cut(s) 17, 71, 360
Ama87I CYCGRG 3 cut(s) 85, 133, 540
AoxI GGCC 5 cut(s) 13, 130, 153, 570, 743
ApeKI GCWGC 6 cut(s) 92, 433, 672, 724, 800, 874
Asp700I GAANNNNTTC 2 cut(s) 71, 271
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 6 cut(s) 131, 137, 158, 203, 286, 743
AsuC2I CCSGG 6 cut(s) 45, 134, 135, 162, 196, 236
AsuHPI GGTGA 6 cut(s) 555, 617, 762, 827, 829, 841
AvaI CYCGRG 3 cut(s) 85, 133, 540
AvaII GGWCC 4 cut(s) 137, 158, 203, 286
BanII GRGCYC 2 cut(s) 541, 645
BarI GAAGNNNNNNTAC 2 cut(s) 680, 712
BauI CACGAG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 827
Bbv12I GWGCWC 2 cut(s) 407, 645
BbvI GCAGC 6 cut(s) 104, 445, 659, 736, 787, 861
BccI CCATC 4 cut(s) 136, 290, 568, 775
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BcnI CCSGG 6 cut(s) 45, 134, 135, 162, 196, 236
BcoDI GTCTC 2 cut(s) 88, 245
BfaI CTAG 2 cut(s) 611, 656
BfoI RGCGCY 1 cut(s) 606
BfuAI ACCTGC 1 cut(s) 427
BglII AGATCT 1 cut(s) 666
BisI GCNGC 9 cut(s) 93, 96, 130, 434, 673, 725, 756, 801, 875
BlsI GCNGC 9 cut(s) 94, 97, 131, 435, 674, 726, 757, 802, 876
BmcAI AGTACT 1 cut(s) 714
Bme1390I CCNGG 6 cut(s) 45, 134, 135, 162, 196, 236
Bme18I GGWCC 4 cut(s) 137, 158, 203, 286
BmeT110I CYCGRG 3 cut(s) 85, 133, 540
BmgT120I GGNCC 6 cut(s) 131, 137, 158, 203, 286, 743
BmiI GGNNCC 3 cut(s) 138, 204, 538
BmrFI CCNGG 6 cut(s) 45, 134, 135, 162, 196, 236
BmsI GCATC 2 cut(s) 29, 753
BpiI GAAGAC 1 cut(s) 827
BplI GAGNNNNNCTC 4 cut(s) 511, 543, 699, 731
BpuEI CTTGAG 2 cut(s) 573, 629
BpuMI CCSGG 6 cut(s) 45, 134, 135, 162, 196, 236
BsaAI YACGTR 2 cut(s) 635, 696
BsaBI GATNNNNATC 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 5 cut(s) 133, 161, 235, 282, 373
BsaWI WCCGGW 4 cut(s) 79, 661, 702, 837
BsaXI ACNNNNNCTCC 4 cut(s) 444, 474, 528, 558
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 162, 167
Bse118I RCCGGY 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 362
BseDI CCNNGG 5 cut(s) 133, 161, 235, 282, 373
BseJI GATNNNNATC 1 cut(s) 362
BseLI CCNNNNNNNGG 3 cut(s) 86, 162, 167
BseMII CTCAG 2 cut(s) 237, 420
BseRI GAGGAG 2 cut(s) 263, 497
BseX3I CGGCCG 1 cut(s) 13
BseXI GCAGC 6 cut(s) 104, 445, 659, 736, 787, 861
BsgI GTGCAG 1 cut(s) 452
Bsh1236I CGCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 5 cut(s) 15, 132, 155, 572, 745
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 2 cut(s) 407, 645
BsiHKCI CYCGRG 3 cut(s) 85, 133, 540
BsiWI CGTACG 1 cut(s) 692
BslFI GGGAC 2 cut(s) 195, 256
BslI CCNNNNNNNGG 3 cut(s) 86, 162, 167
BsmAI GTCTC 2 cut(s) 88, 245
BsmFI GGGAC 2 cut(s) 195, 256
BsnI GGCC 5 cut(s) 15, 132, 155, 572, 745
Bso31I GGTCTC 1 cut(s) 88
BsoBI CYCGRG 3 cut(s) 85, 133, 540
Bsp1286I GDGCHC 3 cut(s) 407, 541, 645
BspACI CCGC 9 cut(s) 25, 41, 95, 98, 121, 129, 176, 756, 827
BspANI GGCC 5 cut(s) 15, 132, 155, 572, 745
BspCNI CTCAG 2 cut(s) 238, 419
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 138, 204, 538
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 3 cut(s) 17, 71, 360
BspQI GCTCTTC 1 cut(s) 786
BspTNI GGTCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 5 cut(s) 133, 161, 235, 282, 373
BssNAI GTATAC 1 cut(s) 847
BssNI GRCGYC 1 cut(s) 232
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 2 cut(s) 282, 373
Bst1107I GTATAC 1 cut(s) 847
Bst2BI CACGAG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 256, 682
Bst6I CTCTTC 2 cut(s) 203, 786
BstACI GRCGYC 1 cut(s) 232
BstBAI YACGTR 2 cut(s) 635, 696
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 3 cut(s) 246, 406, 868
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 1 cut(s) 605
BstMAI GTCTC 2 cut(s) 88, 245
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 442, 649
BstSCI CCNGG 6 cut(s) 43, 132, 133, 160, 194, 234
BstSNI TACGTA 1 cut(s) 696
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 6 cut(s) 104, 445, 659, 736, 787, 861
BstV2I GAAGAC 1 cut(s) 827
BstX2I RGATCY 1 cut(s) 666
BstYI RGATCY 1 cut(s) 666
BstZ17I GTATAC 1 cut(s) 847
BstZI CGGCCG 1 cut(s) 13
BsuRI GGCC 5 cut(s) 15, 132, 155, 572, 745
BtgZI GCGATG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 414
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 641
CfoI GCGC 1 cut(s) 605
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 6 cut(s) 131, 137, 158, 203, 286, 743
Cfr9I CCCGGG 1 cut(s) 133
CpoI CGGWCCG 1 cut(s) 158
CseI GACGC 2 cut(s) 240, 730
Csp6I GTAC 3 cut(s) 693, 697, 713
CspI CGGWCCG 1 cut(s) 158
CviAII CATG 1 cut(s) 115
CviQI GTAC 3 cut(s) 693, 697, 713
DdeI CTNAG 3 cut(s) 246, 406, 868
EaeI YGGCCR 1 cut(s) 13
EagI CGGCCG 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 203, 786
EarI CTCTTC 2 cut(s) 203, 786
EciI GGCGGA 3 cut(s) 30, 113, 191
Ecl136II GAGCTC 1 cut(s) 643
EclXI CGGCCG 1 cut(s) 13
Eco105I TACGTA 1 cut(s) 696
Eco130I CCWWGG 2 cut(s) 282, 373
Eco24I GRGCYC 2 cut(s) 541, 645
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 4 cut(s) 137, 158, 203, 286
Eco52I CGGCCG 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 643
Eco88I CYCGRG 3 cut(s) 85, 133, 540
EcoICRI GAGCTC 1 cut(s) 643
EcoO109I RGGNCCY 2 cut(s) 286, 743
EcoT14I CCWWGG 2 cut(s) 282, 373
EcoT38I GRGCYC 2 cut(s) 541, 645
ErhI CCWWGG 2 cut(s) 282, 373
FaeI CATG 1 cut(s) 118
FaiI YATR 9 cut(s) 116, 385, 387, 389, 391, 393, 584, 847, 896
FaqI GGGAC 2 cut(s) 195, 256
FatI CATG 1 cut(s) 114
FblI GTMKAC 1 cut(s) 846
Fnu4HI GCNGC 9 cut(s) 93, 96, 130, 434, 673, 725, 756, 801, 875
FriOI GRGCYC 2 cut(s) 541, 645
Fsp4HI GCNGC 9 cut(s) 93, 96, 130, 434, 673, 725, 756, 801, 875
FspBI CTAG 2 cut(s) 611, 656
GlaI GCGC 1 cut(s) 604
GluI GCNGC 9 cut(s) 93, 96, 130, 434, 673, 725, 756, 801, 875
HaeII RGCGCY 1 cut(s) 606
HaeIII GGCC 5 cut(s) 15, 132, 155, 572, 745
HgaI GACGC 2 cut(s) 240, 730
HhaI GCGC 1 cut(s) 605
Hin1I GRCGYC 1 cut(s) 232
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HinfI GANTC 4 cut(s) 543, 614, 832, 900
HphI GGTGA 6 cut(s) 555, 617, 762, 827, 829, 841
Hpy166II GTNNAC 2 cut(s) 346, 847
Hpy188I TCNGA 3 cut(s) 141, 207, 357
Hpy188III TCNNGA 6 cut(s) 293, 590, 611, 718, 790, 936
Hpy8I GTNNAC 2 cut(s) 346, 847
Hpy99I CGWCG 1 cut(s) 724
HpyAV CCTTC 6 cut(s) 61, 299, 459, 628, 756, 783
HpyCH4III ACNGT 2 cut(s) 256, 682
HpyCH4IV ACGT 3 cut(s) 634, 695, 843
HpyCH4V TGCA 3 cut(s) 20, 395, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 649
HpyF3I CTNAG 3 cut(s) 246, 406, 868
HpySE526I ACGT 3 cut(s) 634, 695, 843
Hsp92I GRCGYC 1 cut(s) 232
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 1 cut(s) 603
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 4 cut(s) 100, 375, 532, 536
Lsp1109I GCAGC 6 cut(s) 104, 445, 659, 736, 787, 861
LweI GCATC 2 cut(s) 29, 753
MaeI CTAG 2 cut(s) 611, 656
MaeII ACGT 3 cut(s) 634, 695, 843
MaeIII GTNAC 1 cut(s) 829
MboII GAAGA 3 cut(s) 220, 773, 832
MflI RGATCY 1 cut(s) 666
MhlI GDGCHC 3 cut(s) 407, 541, 645
MluCI AATT 1 cut(s) 733
MlyI GAGTC 2 cut(s) 552, 826
MroXI GAANNNNTTC 2 cut(s) 71, 271
MspA1I CMGCKG 3 cut(s) 95, 800, 827
MspR9I CCNGG 6 cut(s) 45, 134, 135, 162, 196, 236
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 442, 649
NciI CCSGG 6 cut(s) 45, 134, 135, 162, 196, 236
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 3 cut(s) 138, 204, 538
NmeAIII GCCGAG 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 786
PdmI GAANNNNTTC 2 cut(s) 71, 271
PfeI GAWTC 2 cut(s) 614, 900
Pfl23II CGTACG 1 cut(s) 692
PkrI GCNGC 9 cut(s) 94, 97, 131, 435, 674, 726, 757, 802, 876
PleI GAGTC 2 cut(s) 551, 826
PpsI GAGTC 2 cut(s) 551, 826
Ppu21I YACGTR 2 cut(s) 635, 696
PpuMI RGGWCCY 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 645
Psp5II RGGWCCY 1 cut(s) 286
PspLI CGTACG 1 cut(s) 692
PspN4I GGNNCC 3 cut(s) 138, 204, 538
PspPI GGNCC 6 cut(s) 131, 137, 158, 203, 286, 743
PspPPI RGGWCCY 1 cut(s) 286
PsuI RGATCY 1 cut(s) 666
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 3 cut(s) 694, 698, 714
RsaNI GTAC 3 cut(s) 693, 697, 713
Rsr2I CGGWCCG 1 cut(s) 158
RsrII CGGWCCG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 645
SapI GCTCTTC 1 cut(s) 786
SatI GCNGC 9 cut(s) 93, 96, 130, 434, 673, 725, 756, 801, 875
Sau96I GGNCC 6 cut(s) 131, 137, 158, 203, 286, 743
ScaI AGTACT 1 cut(s) 714
SchI GAGTC 2 cut(s) 552, 826
ScrFI CCNGG 6 cut(s) 45, 134, 135, 162, 196, 236
SduI GDGCHC 3 cut(s) 407, 541, 645
SfaNI GCATC 2 cut(s) 29, 753
SinI GGWCC 4 cut(s) 137, 158, 203, 286
SmaI CCCGGG 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 588, 644
SmoI CTYRAG 2 cut(s) 588, 644
SnaBI TACGTA 1 cut(s) 696
Sse9I AATT 1 cut(s) 733
SsiI CCGC 9 cut(s) 25, 41, 95, 98, 121, 129, 176, 756, 827
SspMI CTAG 2 cut(s) 611, 656
SstI GAGCTC 1 cut(s) 645
StyD4I CCNGG 6 cut(s) 43, 132, 133, 160, 194, 234
StyI CCWWGG 2 cut(s) 282, 373
TaaI ACNGT 2 cut(s) 256, 682
TaiI ACGT 3 cut(s) 637, 698, 846
TaqI TCGA 6 cut(s) 75, 513, 621, 719, 789, 851
TasI AATT 1 cut(s) 733
TatI WGTACW 1 cut(s) 712
TauI GCSGC 3 cut(s) 98, 132, 758
TfiI GAWTC 2 cut(s) 614, 900
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 6 cut(s) 92, 433, 672, 724, 800, 874
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 1 cut(s) 46
TspMI CCCGGG 1 cut(s) 133
TspRI CASTG 1 cut(s) 414
VpaK11BI GGWCC 4 cut(s) 137, 158, 203, 286
XbaI TCTAGA 1 cut(s) 610
XmaI CCCGGG 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 846
XmnI GAANNNNTTC 2 cut(s) 71, 271
XspI CTAG 2 cut(s) 611, 656
ZrmI AGTACT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.