Rroxscaffold_6G00388100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000640
Physical Location & Seq
Forward (+)
716078 .. 726958
10881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388100.1

Sequence Viewer

Length: 1140 bp
ATGTCCCACGCGTTCTCCCATTTCTCGAGGCCTCGGCAGCGAAGGGACGGGCATTTATTGCACAACCTAGTCCGCCCACGTGGCCGACATGCAAAGCCTACCCCATCGGGTCCCGTGGACTCACATCTTCTACCCCATCGGCATCGAAGCCAAGCTCTCTCCACCCTTTTGGGTACCGGACGATCAAATCTTCTACCCCATCGGGTATCGAAGCCAAGCTCCCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGGAGCCAAGCTCTCTCCACCCCATCGGGTACCGGAGGCTCACATCGTCTACCCCATCGGGTATCGGAGCCAAGCTCTCTCCACCCCATTGGGTACCGGAGGATCAAATCCTCTACCCCATCGGGTATCGAAGCCAAGCTCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGCATCGAAGCCAATCTCTCTCCACCCCATCGGGTACCGGGAGGCTCACATCTTCTACCCCATCGGCATCGGAGCCAAGCTCTCTCCACCCCATTGGGTACCGGAGGTCGACATCTTCTACCCCATCGGGTATCGGAGCCAAGCTCTCTCCACCCTATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGCATCGGAGCCAAGCTCTCTCCACCCCATCGGGTACCGGAGGATCAAATCCTCTACCCCATCGGGTATCGAAGCCAAGCTCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGGTATCGAAGCCAATCTCTCTCCACCCCATTGGGTACCGGAGGCTCACATCTTCTACCCCATCGGCATCGGAGCCAAGCTCTCTCCACCTCATTGGGTACCGGAGGATCAAATCCTCTACCCCATTGGGTATCAAAGCCAAGCTCACCACCCCATCGGGTACGGAGGCTCACAGCCTTCTACCCCATCGGGTATCGAAGCCAATCTCTCTCCACCCCATCGGGTACCGGAGGCTCACATCTTCTACCCCATCGGCATCGAAGCCAAGCTCTCTCCACCTCATTGGGTACCGGATGCTCAAAATTCTACATCCCACCAATCCCGGGGCAACCTCATTGTCCCACGAAAGTGGCTTACCTACGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

40.84

Weight (kDa)

11.79

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 321, 565
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 73
AclWI GGATC 3 cut(s) 382, 698, 887
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 1 cut(s) 1074
AcvI CACGTG 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 1095
AflIII ACRYGT 1 cut(s) 9
AleI CACNNNNGTG 1 cut(s) 1119
AlwI GGATC 3 cut(s) 382, 698, 887
Ama87I CYCGRG 2 cut(s) 25, 1094
AoxI GGCC 2 cut(s) 29, 82
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 1074
AspS9I GGNCC 1 cut(s) 110
AsuC2I CCSGG 3 cut(s) 495, 1095, 1096
AsuHPI GGTGA 1 cut(s) 910
AvaI CYCGRG 2 cut(s) 25, 1094
AvaII GGWCC 1 cut(s) 110
BbrPI CACGTG 1 cut(s) 80
BbvI GCAGC 1 cut(s) 49
BcnI CCSGG 3 cut(s) 495, 1095, 1096
BfaI CTAG 1 cut(s) 68
BglI GCCNNNNNGGC 1 cut(s) 81
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 3 cut(s) 495, 1095, 1096
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 2 cut(s) 25, 1094
BmgT120I GGNCC 1 cut(s) 110
BmrFI CCNGG 3 cut(s) 495, 1095, 1096
BmsI GCATC 7 cut(s) 151, 468, 532, 659, 848, 1037, 1056
BpuMI CCSGG 3 cut(s) 495, 1095, 1096
BsaAI YACGTR 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 32, 114, 1094, 1095
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 1095
BseDI CCNNGG 4 cut(s) 32, 114, 1094, 1095
BseGI GGATG 2 cut(s) 1071, 1081
BseLI CCNNNNNNNGG 1 cut(s) 1095
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 31, 84
BsiHKCI CYCGRG 2 cut(s) 25, 1094
BslFI GGGAC 3 cut(s) 59, 96, 1096
BslI CCNNNNNNNGG 1 cut(s) 1095
BsmFI GGGAC 3 cut(s) 59, 96, 1096
BsnI GGCC 2 cut(s) 31, 84
BsoBI CYCGRG 2 cut(s) 25, 1094
Bsp143I GATC 4 cut(s) 182, 374, 690, 879
BspACI CCGC 1 cut(s) 73
BspANI GGCC 2 cut(s) 31, 84
BspFNI CGCG 1 cut(s) 11
BspPI GGATC 3 cut(s) 382, 698, 887
BssECI CCNNGG 4 cut(s) 32, 114, 1094, 1095
BssMI GATC 4 cut(s) 182, 374, 690, 879
BstAPI GCANNNNNTGC 1 cut(s) 58
BstBAI YACGTR 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 1071, 1081
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 4 cut(s) 185, 377, 693, 882
BstMBI GATC 4 cut(s) 182, 374, 690, 879
BstMWI GCNNNNNNNGC 3 cut(s) 37, 58, 81
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 3 cut(s) 493, 1093, 1094
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 49
BstXI CCANNNNNNTGG 8 cut(s) 169, 233, 361, 550, 803, 866, 1055, 1121
BsuRI GGCC 2 cut(s) 31, 84
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 2 cut(s) 1071, 1081
Cfr13I GGNCC 1 cut(s) 110
Cfr9I CCCGGG 1 cut(s) 1094
CviAII CATG 1 cut(s) 89
DpnI GATC 4 cut(s) 184, 376, 692, 881
DpnII GATC 4 cut(s) 182, 374, 690, 879
EaeI YGGCCR 1 cut(s) 82
EciI GGCGGA 1 cut(s) 62
Eco147I AGGCCT 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 110
Eco72I CACGTG 1 cut(s) 80
Eco88I CYCGRG 2 cut(s) 25, 1094
EcoO109I RGGNCCY 1 cut(s) 110
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FaqI GGGAC 3 cut(s) 59, 96, 1096
FatI CATG 1 cut(s) 88
FblI GTMKAC 2 cut(s) 321, 565
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 2 cut(s) 1068, 1078
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 2 cut(s) 31, 84
Hin1II CATG 1 cut(s) 92
HincII GTYRAC 1 cut(s) 566
HindII GTYRAC 1 cut(s) 566
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 910
Hpy166II GTNNAC 3 cut(s) 118, 322, 566
Hpy188I TCNGA 6 cut(s) 275, 339, 528, 592, 655, 844
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 3 cut(s) 118, 322, 566
HpyAV CCTTC 2 cut(s) 36, 959
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 61, 92
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 58, 81
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 92
KflI GGGWCCC 1 cut(s) 110
Kzo9I GATC 4 cut(s) 182, 374, 690, 879
LmnI GCTCC 7 cut(s) 224, 275, 339, 528, 592, 655, 844
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 7 cut(s) 151, 468, 532, 659, 848, 1037, 1056
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 79
MalI GATC 4 cut(s) 184, 376, 692, 881
MboI GATC 4 cut(s) 182, 374, 690, 879
MluCI AATT 1 cut(s) 1074
MluI ACGCGT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 1119
MspR9I CCNGG 3 cut(s) 495, 1095, 1096
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 37, 58, 81
NciI CCSGG 3 cut(s) 495, 1095, 1096
NdeII GATC 4 cut(s) 182, 374, 690, 879
NlaIII CATG 1 cut(s) 92
NmeAIII GCCGAG 1 cut(s) 13
NspI RCATGY 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 1119
PaeR7I CTCGAG 1 cut(s) 25
PceI AGGCCT 1 cut(s) 31
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 113
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
PpsI GAGTC 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 110
PspCI CACGTG 1 cut(s) 80
PspPI GGNCC 1 cut(s) 110
PspPPI RGGWCCY 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 1119
SalI GTCGAC 1 cut(s) 564
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 4 cut(s) 182, 374, 690, 879
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 3 cut(s) 495, 1095, 1096
SfaNI GCATC 7 cut(s) 151, 468, 532, 659, 848, 1037, 1056
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 1096
SmiMI CAYNNNNRTG 1 cut(s) 1119
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 1074
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 68
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 3 cut(s) 493, 1093, 1094
TaiI ACGT 1 cut(s) 82
TasI AATT 1 cut(s) 1074
TseI GCWGC 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 950
TspMI CCCGGG 1 cut(s) 1094
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 1074
XceI RCATGY 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 25
XmaI CCCGGG 1 cut(s) 1094
XmiI GTMKAC 2 cut(s) 321, 565
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.